FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0660.ptfa, 86 aa
 vs ./tmplib.26680 library

1768931 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.0281+/-0.00457; mu= 1.6234+/- 0.306
 mean_var=106.5016+/-24.602, 0's: 0 Z-trim: 3  B-trim: 0 in 0/35
 Lambda= 0.1243

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4115  ( 505 res)   msj06256                   ( 505)  152   36 0.00099


>>mKIAA4115  ( 505 res)   msj06256                        (505 aa)
 initn: 279 init1: 107 opt: 152  Z-score: 159.4  bits: 36.5 E(): 0.00099
Smith-Waterman score: 241;  62.667% identity (79.661% ungapped) in 75 aa overlap (1-75:441-499)

                                             10        20        30
mKIAA0                               RGEVRLNVEEKKTRAARERETRGGGDDRRD
                                     :: :::::::::::::::        ::::
mKIAA4 SGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGAVRLNVEEKKTRAARE-------GDRRD
              420       430       440       450              460   

               40        50        60        70        80      
mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR
        :   ::::::::  .:::      :::: ::::.:: : : : :           
mKIAA4 NRL--RGPGGPRGGPSGGM------RGPP-RGGMVQKPGFGVGRGITTPRQ     
             470       480              490       500          




86 residues in 1 query   sequences
1768931 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:25:37 2006 done: Mon Mar 27 10:25:37 2006
 Scan time:  0.290 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]