# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbk00133.fasta.nr -Q ../query/mKIAA0660.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0660, 86 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7916618 sequences Expectation_n fit: rho(ln(x))= 4.9574+/-0.00019; mu= 5.7020+/- 0.011 mean_var=80.5932+/-15.510, 0's: 85 Z-trim: 93 B-trim: 710 in 1/66 Lambda= 0.142865 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|74001624|ref|XP_855954.1| PREDICTED: similar to ( 131) 601 132.0 1.6e-29 gi|74207300|dbj|BAE30836.1| unnamed protein produc ( 448) 606 133.6 1.9e-29 gi|50927029|gb|AAH79225.1| GTPase activating prote ( 449) 606 133.6 1.9e-29 gi|26345096|dbj|BAC36197.1| unnamed protein produc ( 449) 606 133.6 1.9e-29 gi|14916570|sp|P97379.2|G3BP2_MOUSE RecName: Full= ( 482) 606 133.6 2e-29 gi|149033807|gb|EDL88603.1| similar to RNA-binding ( 482) 606 133.6 2e-29 gi|74216966|dbj|BAE26595.1| unnamed protein produc ( 553) 606 133.6 2.2e-29 gi|74001630|ref|XP_856070.1| PREDICTED: similar to ( 332) 601 132.4 3.1e-29 gi|67969841|dbj|BAE01268.1| unnamed protein produc ( 424) 601 132.5 3.7e-29 gi|74001626|ref|XP_855995.1| PREDICTED: similar to ( 449) 601 132.5 3.9e-29 gi|194209058|ref|XP_001489896.2| PREDICTED: GTPase ( 449) 601 132.5 3.9e-29 gi|4007412|gb|AAC95292.1| ras-GAP/RNA binding prot ( 449) 601 132.5 3.9e-29 gi|74001632|ref|XP_856112.1| PREDICTED: similar to ( 481) 601 132.6 4.1e-29 gi|5805295|gb|AAD51932.1|AF145284_1 RNA-binding pr ( 482) 601 132.6 4.1e-29 gi|109074462|ref|XP_001100686.1| PREDICTED: simila ( 482) 601 132.6 4.1e-29 gi|55728996|emb|CAH91236.1| hypothetical protein [ ( 482) 601 132.6 4.1e-29 gi|194209060|ref|XP_001489923.2| PREDICTED: GTPase ( 482) 601 132.6 4.1e-29 gi|74001638|ref|XP_848490.1| PREDICTED: similar to ( 482) 601 132.6 4.1e-29 gi|74001636|ref|XP_856193.1| PREDICTED: similar to ( 483) 601 132.6 4.1e-29 gi|74001634|ref|XP_856147.1| PREDICTED: similar to ( 483) 601 132.6 4.1e-29 gi|158256976|dbj|BAF84461.1| unnamed protein produ ( 449) 600 132.3 4.5e-29 gi|74139958|dbj|BAE31814.1| unnamed protein produc ( 550) 601 132.6 4.5e-29 gi|118090133|ref|XP_420536.2| PREDICTED: similar t ( 482) 598 131.9 6.3e-29 gi|3098601|gb|AAC15705.1| Ras-GAP SH3 binding prot ( 449) 596 131.5 8e-29 gi|126330676|ref|XP_001365000.1| PREDICTED: simila ( 449) 593 130.9 1.2e-28 gi|126330674|ref|XP_001364927.1| PREDICTED: simila ( 482) 593 130.9 1.3e-28 gi|86823966|gb|AAI05568.1| GTPase activating prote ( 449) 590 130.3 1.9e-28 gi|224049065|ref|XP_002193860.1| PREDICTED: GTPase ( 449) 589 130.1 2.2e-28 gi|224049067|ref|XP_002193829.1| PREDICTED: GTPase ( 482) 589 130.1 2.3e-28 gi|149480514|ref|XP_001520721.1| PREDICTED: simila ( 241) 571 126.1 1.8e-27 gi|1698657|gb|AAC53553.1| ras-GTPase-activating pr ( 482) 557 123.5 2.2e-26 gi|39795768|gb|AAH64172.1| GTPase activating prote ( 484) 519 115.7 5e-24 gi|49903639|gb|AAH76729.1| MGC81268 protein [Xenop ( 483) 511 114.0 1.6e-23 gi|120537623|gb|AAI29214.1| Zgc:158370 [Danio reri ( 507) 448 101.0 1.3e-19 gi|47214257|emb|CAG01934.1| unnamed protein produc ( 440) 425 96.2 3.2e-18 gi|74143827|dbj|BAE41234.1| unnamed protein produc ( 40) 292 67.8 1e-10 gi|47215074|emb|CAG04528.1| unnamed protein produc ( 486) 214 52.8 4.2e-05 gi|210088304|gb|EEA36645.1| hypothetical protein B ( 457) 184 46.6 0.0029 gi|209155814|gb|ACI34139.1| Ras GTPase-activating ( 487) 184 46.6 0.0031 gi|28175264|gb|AAH45211.1| MGC52883 protein [Xenop ( 222) 179 45.3 0.0036 gi|77748394|gb|AAI06625.1| MGC52883 protein [Xenop ( 247) 179 45.3 0.0039 gi|3721940|dbj|BAA33761.1| NO27 [Xenopus laevis] ( 248) 179 45.3 0.0039 >>gi|74001624|ref|XP_855954.1| PREDICTED: similar to Ras (131 aa) initn: 601 init1: 601 opt: 601 Z-score: 686.2 bits: 132.0 E(): 1.6e-29 Smith-Waterman score: 601; 98.837% identity (100.000% similar) in 86 aa overlap (1-86:46-131) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|740 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 20 30 40 50 60 70 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR ::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|740 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQRR 80 90 100 110 120 130 >>gi|74207300|dbj|BAE30836.1| unnamed protein product [M (448 aa) initn: 606 init1: 606 opt: 606 Z-score: 685.0 bits: 133.6 E(): 1.9e-29 Smith-Waterman score: 606; 100.000% identity (100.000% similar) in 86 aa overlap (1-86:363-448) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|742 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 340 350 360 370 380 390 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR 400 410 420 430 440 >>gi|50927029|gb|AAH79225.1| GTPase activating protein ( (449 aa) initn: 606 init1: 606 opt: 606 Z-score: 685.0 bits: 133.6 E(): 1.9e-29 Smith-Waterman score: 606; 100.000% identity (100.000% similar) in 86 aa overlap (1-86:364-449) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|509 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 340 350 360 370 380 390 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|509 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR 400 410 420 430 440 >>gi|26345096|dbj|BAC36197.1| unnamed protein product [M (449 aa) initn: 606 init1: 606 opt: 606 Z-score: 685.0 bits: 133.6 E(): 1.9e-29 Smith-Waterman score: 606; 100.000% identity (100.000% similar) in 86 aa overlap (1-86:364-449) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|263 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 340 350 360 370 380 390 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR 400 410 420 430 440 >>gi|14916570|sp|P97379.2|G3BP2_MOUSE RecName: Full=Ras (482 aa) initn: 606 init1: 606 opt: 606 Z-score: 684.6 bits: 133.6 E(): 2e-29 Smith-Waterman score: 606; 100.000% identity (100.000% similar) in 86 aa overlap (1-86:397-482) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|149 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 370 380 390 400 410 420 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR 430 440 450 460 470 480 >>gi|149033807|gb|EDL88603.1| similar to RNA-binding pro (482 aa) initn: 606 init1: 606 opt: 606 Z-score: 684.6 bits: 133.6 E(): 2e-29 Smith-Waterman score: 606; 100.000% identity (100.000% similar) in 86 aa overlap (1-86:397-482) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|149 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 370 380 390 400 410 420 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR 430 440 450 460 470 480 >>gi|74216966|dbj|BAE26595.1| unnamed protein product [M (553 aa) initn: 606 init1: 606 opt: 606 Z-score: 683.8 bits: 133.6 E(): 2.2e-29 Smith-Waterman score: 606; 100.000% identity (100.000% similar) in 86 aa overlap (1-86:468-553) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|742 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 440 450 460 470 480 490 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR 500 510 520 530 540 550 >>gi|74001630|ref|XP_856070.1| PREDICTED: similar to Ras (332 aa) initn: 601 init1: 601 opt: 601 Z-score: 681.1 bits: 132.4 E(): 3.1e-29 Smith-Waterman score: 601; 98.837% identity (100.000% similar) in 86 aa overlap (1-86:247-332) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|740 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 220 230 240 250 260 270 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR ::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|740 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQRR 280 290 300 310 320 330 >>gi|67969841|dbj|BAE01268.1| unnamed protein product [M (424 aa) initn: 601 init1: 601 opt: 601 Z-score: 679.7 bits: 132.5 E(): 3.7e-29 Smith-Waterman score: 601; 98.837% identity (100.000% similar) in 86 aa overlap (1-86:339-424) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|679 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 310 320 330 340 350 360 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR ::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|679 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQRR 370 380 390 400 410 420 >>gi|74001626|ref|XP_855995.1| PREDICTED: similar to Ras (449 aa) initn: 601 init1: 601 opt: 601 Z-score: 679.4 bits: 132.5 E(): 3.9e-29 Smith-Waterman score: 601; 98.837% identity (100.000% similar) in 86 aa overlap (1-86:364-449) 10 20 30 mKIAA0 RGEVRLNVEEKKTRAARERETRGGGDDRRD :::::::::::::::::::::::::::::: gi|740 VGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRD 340 350 360 370 380 390 40 50 60 70 80 mKIAA0 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR ::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|740 IRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQRR 400 410 420 430 440 86 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 18:29:45 2009 done: Sun Mar 15 18:33:18 2009 Total Scan time: 484.520 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]