FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0026.ptfa, 288 aa
 vs ./tmplib.26680 library

1768729 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.8879+/-0.00593; mu= 3.4525+/- 0.396
 mean_var=164.7951+/-39.035, 0's: 0 Z-trim: 2  B-trim: 41 in 1/35
 Lambda= 0.0999

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4002  ( 218 res)   mfj03141                   ( 218) 1208  185 2.7e-48


>>mKIAA4002  ( 218 res)   mfj03141                        (218 aa)
 initn: 1208 init1: 1208 opt: 1208  Z-score: 959.4  bits: 185.0 E(): 2.7e-48
Smith-Waterman score: 1208;  86.473% identity (86.473% ungapped) in 207 aa overlap (82-288:12-218)

              60        70        80        90       100       110 
mKIAA0 DPALPGRWGGRSAENPPSGSVRKTRKNKQKAPGNGDGGSTSEVPQPPRKKRARADPTVES
                                     ::::::::::::.::::::::::.:::::.
mKIAA4                    PVPPLPCIHFVAPGNGDGGSTSETPQPPRKKRARVDPTVEN
                                  10        20        30        40 

             120       130       140       150       160       170 
mKIAA0 EEAFKSRMEVKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANCKKSQGN
       ::.: .:.:::::::::::::::.::::.::::::: ::::::::.:::.::: :::.::
mKIAA4 EETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN
              50        60        70        80        90       100 

             180       190       200       210       220       230 
mKIAA0 VDNKDYAVNEVVGGIKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQIYGAPHLLRL
       .:::.:::::::.:::::::::::::::::::::::::::  ::::::::.:::::::::
mKIAA4 TDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRL
             110       120       130       140       150       160 

             240       250       260       270       280        
mKIAA0 FVRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASADYHRKAL
       ::::::::::::::::::::::.::::::::::::::.::.::::.::  .:::::.
mKIAA4 FVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRKAV
             170       180       190       200       210        




288 residues in 1 query   sequences
1768729 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:10:49 2006 done: Mon Mar 27 10:10:50 2006
 Scan time:  0.510 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]