FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1404.ptfa, 472 aa
 vs ./tmplib.26680 library

1768545 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.1643+/-0.00557; mu= 14.7642+/- 0.370
 mean_var=166.0193+/-39.245, 0's: 0 Z-trim: 8  B-trim: 43 in 1/35
 Lambda= 0.0995

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0149  ( 827 res)   msp04035                   ( 827)  180   38  0.0028


>>mKIAA0149  ( 827 res)   msp04035                        (827 aa)
 initn: 136 init1:  76 opt: 180  Z-score: 151.3  bits: 38.2 E(): 0.0028
Smith-Waterman score: 192;  28.000% identity (37.838% ungapped) in 150 aa overlap (2-122:156-295)

                                            10        20           
mKIAA1                              PGSCHSCFEGRFHERCQQPCKRLLICS--HK
                                     : :: :  : .   :..::.    :.   .
mKIAA0 GDCQCQPNYWGRLCEFPCTCGPHGQCDPKTGLCH-CDPGWWSPTCRRPCQ----CNPASR
         130       140       150        160       170           180

      30         40              50        60               70     
mKIAA1 C-QEPCTGECPP------CQRTCQNRCVHSQCKKKCGE-LCSP------CVEPCVWRCQH
       : :   :  :::      :. .:.  :  : : .  :. .: :      : . :  .: .
mKIAA0 CDQATGTCVCPPGWWGRRCSFSCN--CHTSPCMQDSGRCVCLPGWWGPECSRKC--QCVR
              190       200         210       220       230        

          80        90                    100       110       120  
mKIAA1 YQCTKLCSEPCNRPP------CYVPCTK-------LLACGHPCIGLCGEPCPKKCRVCQP
        ::. . :  :. ::      : .::.          .:::  ..    :   .:. :.:
mKIAA0 GQCS-VTSGHCSCPPGFHGIRCELPCNPGHYGAQCKESCGHCELNATCSPVTGNCESCKP
        240        250       260       270       280       290     

            130       140       150       160       170       180  
mKIAA1 DEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRFMNEQKDDEVAIKLKVCPICQVPIR
                                                                   
mKIAA0 GWNGTQCKQPCPAGTFGERCTGQCPRCRLGEPCQAETGHCQHCDPGWLGHRCENPCPLGT
         300       310       320       330       340       350     




472 residues in 1 query   sequences
1768545 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:43:54 2006 done: Mon Mar 27 10:43:55 2006
 Scan time:  0.680 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]