# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbj00725.fasta.nr -Q ../query/mKIAA0270.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0270, 350 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919576 sequences Expectation_n fit: rho(ln(x))= 6.3259+/-0.000193; mu= 5.2726+/- 0.011 mean_var=108.0920+/-20.691, 0's: 40 Z-trim: 45 B-trim: 0 in 0/67 Lambda= 0.123361 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|22653923|sp|Q9Z0P4.1|PALM_MOUSE RecName: Full=P ( 383) 2263 413.0 5.1e-113 gi|26331906|dbj|BAC29683.1| unnamed protein produc ( 383) 2258 412.1 9.4e-113 gi|15823744|dbj|BAB68565.1| paralemmin [Rattus nor ( 383) 2193 400.5 2.9e-109 gi|3219602|emb|CAA76151.1| paralemin [Homo sapiens ( 387) 1853 340.0 4.7e-91 gi|22653899|sp|O75781.2|PALM_HUMAN RecName: Full=P ( 387) 1848 339.1 8.8e-91 gi|189054789|dbj|BAG37611.1| unnamed protein produ ( 387) 1839 337.5 2.7e-90 gi|114674370|ref|XP_524021.2| PREDICTED: paralemmi ( 783) 1833 336.7 9.7e-90 gi|118573099|sp|Q2MJV8.1|PALM_PIG RecName: Full=Pa ( 387) 1757 322.9 6.6e-86 gi|194668544|ref|XP_001253885.2| PREDICTED: simila ( 414) 1753 322.2 1.1e-85 gi|73987598|ref|XP_542216.2| PREDICTED: similar to ( 394) 1484 274.3 2.8e-71 gi|126323742|ref|XP_001375715.1| PREDICTED: simila ( 707) 1375 255.1 3.1e-65 gi|221043494|dbj|BAH13424.1| unnamed protein produ ( 252) 1337 248.0 1.5e-63 gi|15929750|gb|AAH15297.1| Palm protein [Mus muscu ( 339) 1170 218.4 1.7e-54 gi|74193950|dbj|BAE36902.1| unnamed protein produc ( 339) 1169 218.2 1.9e-54 gi|4456678|emb|CAB37404.1| PALM [Mus musculus] ( 339) 1168 218.1 2.1e-54 gi|149034654|gb|EDL89391.1| paralemmin, isoform CR ( 339) 1162 217.0 4.5e-54 gi|4456614|emb|CAB37401.1| PALM [Homo sapiens] ( 343) 1016 191.0 3e-46 gi|4186043|emb|CAA76152.1| paralemin [Homo sapiens ( 343) 1012 190.3 4.9e-46 gi|193785700|dbj|BAG51135.1| unnamed protein produ ( 270) 996 187.4 2.9e-45 gi|109122698|ref|XP_001117149.1| PREDICTED: simila ( 363) 997 187.7 3.3e-45 gi|118103211|ref|XP_418217.2| PREDICTED: paralemmi ( 429) 943 178.1 2.9e-42 gi|22653922|sp|Q9YGL6.1|PALM_CHICK RecName: Full=P ( 386) 941 177.7 3.4e-42 gi|74227493|dbj|BAE21809.1| unnamed protein produc ( 176) 856 162.3 6.6e-38 gi|149634409|ref|XP_001506793.1| PREDICTED: simila ( 684) 693 133.7 1e-28 gi|221042916|dbj|BAH13135.1| unnamed protein produ ( 172) 584 113.9 2.4e-23 gi|149609979|ref|XP_001506134.1| PREDICTED: simila ( 216) 548 107.6 2.5e-21 gi|3694629|gb|AAC62429.1| paralemmin, partial CDS ( 140) 534 104.9 9.9e-21 gi|224087653|ref|XP_002193573.1| PREDICTED: simila (1033) 518 102.7 3.4e-19 gi|15384740|emb|CAC59693.1| paralemmin-2 [Homo sap ( 411) 467 93.4 8.9e-17 gi|119579457|gb|EAW59053.1| hCG28765, isoform CRA_ ( 413) 467 93.4 9e-17 gi|15384742|emb|CAC59702.1| Palm2-AKAP2 fusion pro ( 433) 467 93.4 9.3e-17 gi|73971946|ref|XP_538782.2| PREDICTED: similar to ( 411) 462 92.5 1.7e-16 gi|119579459|gb|EAW59055.1| hCG28765, isoform CRA_ (1335) 467 93.7 2.2e-16 gi|119579455|gb|EAW59051.1| hCG28765, isoform CRA_ (1337) 467 93.7 2.2e-16 gi|224089386|ref|XP_002188178.1| PREDICTED: simila ( 862) 460 92.4 3.8e-16 gi|194669709|ref|XP_871123.3| PREDICTED: similar t (1331) 451 90.9 1.6e-15 gi|149642299|ref|XP_001512747.1| PREDICTED: simila (1312) 437 88.4 8.9e-15 gi|189524033|ref|XP_699267.3| PREDICTED: similar t ( 324) 412 83.5 6.6e-14 gi|4456149|emb|CAB37359.1| PALM [Gallus gallus] ( 342) 409 83.0 9.9e-14 gi|189524027|ref|XP_001921437.1| PREDICTED: simila ( 355) 409 83.0 1e-13 gi|126334264|ref|XP_001375897.1| PREDICTED: simila (1302) 395 80.9 1.6e-12 gi|4456150|emb|CAB37360.1| PALM [Gallus gallus] ( 321) 375 76.9 6.3e-12 gi|63101228|gb|AAH95910.1| LOC594906 protein [Xeno ( 348) 337 70.2 7.2e-10 gi|27881749|gb|AAH44690.1| LOC100101269 protein [X ( 319) 322 67.5 4.3e-09 gi|34785086|gb|AAH56777.1| Zgc:63523 [Danio rerio] ( 244) 310 65.3 1.5e-08 gi|169159010|emb|CAQ15657.1| novel protein similar ( 244) 309 65.1 1.7e-08 gi|82176498|sp|Q7ZX27.1|PALMD_XENLA RecName: Full= ( 535) 307 65.0 4.1e-08 gi|62205126|gb|AAH92750.1| Zgc:110136 [Danio rerio ( 321) 301 63.7 5.8e-08 gi|189515779|ref|XP_688292.3| PREDICTED: similar t ( 459) 289 61.7 3.3e-07 gi|92097760|gb|AAI15258.1| LOC559824 protein [Dani ( 462) 289 61.7 3.4e-07 >>gi|22653923|sp|Q9Z0P4.1|PALM_MOUSE RecName: Full=Paral (383 aa) initn: 2263 init1: 2263 opt: 2263 Z-score: 2185.4 bits: 413.0 E(): 5.1e-113 Smith-Waterman score: 2263; 100.000% identity (100.000% similar) in 350 aa overlap (1-350:34-383) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA :::::::::::::::::::::::::::::: gi|226 LATDTASQQERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTSTPVRSPGGSTMMKAAMYSVEITVEKDKVTGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 SPAKEEQKSETLVNAQQTPLGTPKENRTSTPVRSPGGSTMMKAAMYSVEITVEKDKVTGE 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA0 TRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 TRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTL 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA0 SEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 SEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMG 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA0 YQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPATKEENQTGPTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|226 YQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPATKEENQTGPTTT 310 320 330 340 350 360 340 350 mKIAA0 PSDTQDLDMKKPRCRCCSVM :::::::::::::::::::: gi|226 PSDTQDLDMKKPRCRCCSVM 370 380 >>gi|26331906|dbj|BAC29683.1| unnamed protein product [M (383 aa) initn: 2258 init1: 2258 opt: 2258 Z-score: 2180.6 bits: 412.1 E(): 9.4e-113 Smith-Waterman score: 2258; 99.714% identity (100.000% similar) in 350 aa overlap (1-350:34-383) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA :::::::::::::::::::::::::::::: gi|263 LATDTASQQERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SEGDEDIRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTSTPVRSPGGSTMMKAAMYSVEITVEKDKVTGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SPAKEEQKSETLVNAQQTPLGTPKENRTSTPVRSPGGSTMMKAAMYSVEITVEKDKVTGE 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA0 TRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 TRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTL 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA0 SEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMG 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA0 YQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPATKEENQTGPTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 YQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPATKEENQTGPTTT 310 320 330 340 350 360 340 350 mKIAA0 PSDTQDLDMKKPRCRCCSVM :::::::::::::::::::: gi|263 PSDTQDLDMKKPRCRCCSVM 370 380 >>gi|15823744|dbj|BAB68565.1| paralemmin [Rattus norvegi (383 aa) initn: 2193 init1: 2193 opt: 2193 Z-score: 2118.1 bits: 400.5 E(): 2.9e-109 Smith-Waterman score: 2193; 96.286% identity (99.143% similar) in 350 aa overlap (1-350:34-383) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA :::::::::::::::::::::::::::::: gi|158 LATDTVSQQERLQAIAEKRRKQAEIESKRRQLEDDRRQLQYLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA :::::::::::::::::::.:::::::::::::::::::::::: ::::::::: ::.:. gi|158 SEGDEDMRKQMQEDEQKARSLEESITRLEKEIDVLEFGESAPAAPKENSAAPSPIRPHST 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTSTPVRSPGGSTMMKAAMYSVEITVEKDKVTGE :::::::::::.::::::::::::::: :::::::::::::::::::::::::::::::: gi|158 SPAKEEQKSETMVNAQQTPLGTPKENRKSTPVRSPGGSTMMKAAMYSVEITVEKDKVTGE 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA0 TRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVTL ::::::::.:::::::::::::::::::::::::..:::::::::::::::::::::::: gi|158 TRVLSSTTLLPRDPLPQGVKVYEDETKVVHAVDGLSENGIQPLSSSEVDELIHKADEVTL 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA0 SEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMG ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SEAGSTTGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFMG 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA0 YQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPATKEENQTGPTTT :::::::::::::::::::::::::::::..::::::::::::::::::::::::::::: gi|158 YQNVEDEAETKKVLGLQDTIKAELVVIEDSVTPREPAPLNGSAAELPATKEENQTGPTTT 310 320 330 340 350 360 340 350 mKIAA0 PSDTQDLDMKKPRCRCCSVM :::::::::::::::::::: gi|158 PSDTQDLDMKKPRCRCCSVM 370 380 >>gi|3219602|emb|CAA76151.1| paralemin [Homo sapiens] (387 aa) initn: 1843 init1: 1104 opt: 1853 Z-score: 1791.0 bits: 340.0 E(): 4.7e-91 Smith-Waterman score: 1853; 80.508% identity (92.373% similar) in 354 aa overlap (1-350:34-387) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::.:::::.::::::::::::::::::: gi|321 LAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA ::::::.:.:::.::::.: ::.:..::::::.::: :.:::::.:::.::::: : . gi|321 SEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPAAAKENAAAPSPVRAPAP 70 80 90 100 110 120 100 110 120 130 140 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTG ::::::.:.:...:.::::.::::..:.: ::.:. :: :::::::::::::::::::: gi|321 SPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTG 130 140 150 160 170 180 150 160 170 180 190 200 mKIAA0 ETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVT :::::::::.:::.::: :.::::::::::::::: :::::.:::::::::::::::::: gi|321 ETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVT 190 200 210 220 230 240 210 220 230 240 250 260 mKIAA0 LSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFM ::::::::: :: :: .: ..::::::::::::.:::::::::::::::::::::::.:: gi|321 LSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFM 250 260 270 280 290 300 270 280 290 300 310 320 mKIAA0 GYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELP---ATKEENQTG ::::::::::::::::::::: :::::::::: :.:::: :::::: : :..::::.: gi|321 GYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAG 310 320 330 340 350 360 330 340 350 mKIAA0 PTTTPSDTQDLDMKKPRCRCCSVM : .: :: ::::::: ::.:::.: gi|321 PEATTSDPQDLDMKKHRCKCCSIM 370 380 >>gi|22653899|sp|O75781.2|PALM_HUMAN RecName: Full=Paral (387 aa) initn: 1838 init1: 1104 opt: 1848 Z-score: 1786.2 bits: 339.1 E(): 8.8e-91 Smith-Waterman score: 1848; 80.226% identity (92.373% similar) in 354 aa overlap (1-350:34-387) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::.:::::.::::::::::::::::::: gi|226 LAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA ::::::.:.:::.::::.: ::.:..::::::.::: :.::::..:::.::::: : . gi|226 SEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAP 70 80 90 100 110 120 100 110 120 130 140 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTG ::::::.:.:...:.::::.::::..:.: ::.:. :: :::::::::::::::::::: gi|226 SPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTG 130 140 150 160 170 180 150 160 170 180 190 200 mKIAA0 ETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVT :::::::::.:::.::: :.::::::::::::::: :::::.:::::::::::::::::: gi|226 ETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVT 190 200 210 220 230 240 210 220 230 240 250 260 mKIAA0 LSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFM ::::::::: :: :: .: ..::::::::::::.:::::::::::::::::::::::.:: gi|226 LSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFM 250 260 270 280 290 300 270 280 290 300 310 320 mKIAA0 GYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELP---ATKEENQTG ::::::::::::::::::::: :::::::::: :.:::: :::::: : :..::::.: gi|226 GYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAG 310 320 330 340 350 360 330 340 350 mKIAA0 PTTTPSDTQDLDMKKPRCRCCSVM : .: :: ::::::: ::.:::.: gi|226 PEATTSDPQDLDMKKHRCKCCSIM 370 380 >>gi|189054789|dbj|BAG37611.1| unnamed protein product [ (387 aa) initn: 1829 init1: 1095 opt: 1839 Z-score: 1777.5 bits: 337.5 E(): 2.7e-90 Smith-Waterman score: 1839; 79.944% identity (92.090% similar) in 354 aa overlap (1-350:34-387) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::.:::::.::::::::::::::::::: gi|189 LAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA ::::::.:.:::.::::.: ::.:..::::::.::: :.::::..:::.::::: : . gi|189 SEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAP 70 80 90 100 110 120 100 110 120 130 140 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTG ::::::.:.:...:.::::.::::..:.: ::.:. :: :::::::::::::::::::: gi|189 SPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTG 130 140 150 160 170 180 150 160 170 180 190 200 mKIAA0 ETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVT :::::::::.:::.: : :.::::::::::::::: :::::.:::::::::::::::::: gi|189 ETRVLSSTTLLPRQPPPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVT 190 200 210 220 230 240 210 220 230 240 250 260 mKIAA0 LSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFM ::::::::: :: :: .: ..::::::::::::.:::::::::::::::::::::::.:: gi|189 LSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFM 250 260 270 280 290 300 270 280 290 300 310 320 mKIAA0 GYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELP---ATKEENQTG ::::::::::::::::::::: :::::::::: :.:::: :::::: : :..::::.: gi|189 GYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAG 310 320 330 340 350 360 330 340 350 mKIAA0 PTTTPSDTQDLDMKKPRCRCCSVM : .: :: ::::::: ::.:::.: gi|189 PEATTSDPQDLDMKKHRCKCCSIM 370 380 >>gi|114674370|ref|XP_524021.2| PREDICTED: paralemmin [P (783 aa) initn: 1823 init1: 1104 opt: 1833 Z-score: 1767.4 bits: 336.7 E(): 9.7e-90 Smith-Waterman score: 1833; 79.661% identity (92.090% similar) in 354 aa overlap (1-350:430-783) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::.:: :..::::::::::::::::::: gi|114 SXTPXPXPDPXXPSXXXXPXXPVDIDNKRRQLEDERRPLHHLKSKALRERWLLEGTPSSA 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRPQSA ::::::.:.:::.::::.: ::.:..::::::.::: :.:::::.:::.::::: : . gi|114 SEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPAAAKENAAAPSPVRAPAP 460 470 480 490 500 510 100 110 120 130 140 mKIAA0 SPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVTG ::::::.:.:...:.::::.::::..:.: ::.:. :: :::::::::::::::::::: gi|114 SPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTG 520 530 540 550 560 570 150 160 170 180 190 200 mKIAA0 ETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEVT :::::::::.:::.::: :.::::::::::::::: :::::.:::::::::::::::::: gi|114 ETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVT 580 590 600 610 620 630 210 220 230 240 250 260 mKIAA0 LSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVFM ::::::::: :: :: .: ..::::::::::::.:::::::::::::::::::::::.:: gi|114 LSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFM 640 650 660 670 680 690 270 280 290 300 310 320 mKIAA0 GYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELP---ATKEENQTG ::::::::::::::::::::: :::::::::: :.:::: :::::: : :..::::.: gi|114 GYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAG 700 710 720 730 740 750 330 340 350 mKIAA0 PTTTPSDTQDLDMKKPRCRCCSVM : .: :. ::::::: ::.:::.: gi|114 PEATTSEPQDLDMKKHRCKCCSIM 760 770 780 >>gi|118573099|sp|Q2MJV8.1|PALM_PIG RecName: Full=Parale (387 aa) initn: 1690 init1: 592 opt: 1757 Z-score: 1698.6 bits: 322.9 E(): 6.6e-86 Smith-Waterman score: 1757; 78.933% identity (89.607% similar) in 356 aa overlap (1-350:34-387) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::::::::.::::::::::::::::::: gi|118 LAAETISQQERLQAIAEKRRRQAEVENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSA 10 20 30 40 50 60 40 50 60 70 80 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENSAAPSPGRP--Q ::::::::::::::::::: :::::.::::::. :: ... :: ::...::::: : gi|118 SEGDEDMRKQMQEDEQKARLLEESIARLEKEIEELENADTLPAPVKETQVAPSPG-PVVP 70 80 90 100 110 120 90 100 110 120 130 140 mKIAA0 SASPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKV . ::.:..:.:. .::::::.:::::.: : ::.: :::::.::::::::::::::: gi|118 APCPAQEDRKAEVDLNAQQTPVGTPKEKRISNTPMRMVEGSTMMNAAMYSVEITVEKDKV 130 140 150 160 170 180 150 160 170 180 190 200 mKIAA0 TGETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADE :::::::::.:::::. :::.::::::::::::::: :::::.:::::::::::::::: gi|118 TGETRVLSSATVLPREHPPQGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADE 190 200 210 220 230 240 210 220 230 240 250 260 mKIAA0 VTLSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMV ::::::::.:.: : :: .:.:.::::::::::::.:::::::::::::::::::::::. gi|118 VTLSEAGSAAAP-ETRGPSEEVVRTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMI 250 260 270 280 290 300 270 280 290 300 310 320 mKIAA0 FMGYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPAT---KEENQ :::::::::::::.::::::::: :::::::::: :.:::: :::::: :: .:::: gi|118 FMGYQNVEDEAETQKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPLATEGSREENQ 310 320 330 340 350 360 330 340 350 mKIAA0 TGPTTTPSDTQDLDMKKPRCRCCSVM .:: . :: ::::::: ::.:::.: gi|118 VGPEAPASDPQDLDMKKQRCKCCSIM 370 380 >>gi|194668544|ref|XP_001253885.2| PREDICTED: similar to (414 aa) initn: 1738 init1: 1097 opt: 1753 Z-score: 1694.4 bits: 322.2 E(): 1.1e-85 Smith-Waterman score: 1753; 76.901% identity (90.141% similar) in 355 aa overlap (1-350:60-414) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::::::::.::::::::::::::::::: gi|194 LVAETPSQQERLQAIAEKRRRQAEIENRRRQLEDDRRQLQHLKSKALRERWLLEGTPSSA 30 40 50 60 70 80 40 50 60 70 80 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITRLEKEIDVLEFGESAPAASKENS-AAPSPGRPQS ::::::::.:::::::::: :::::.:::.::. :: .. :.:. ..: :::::. . gi|194 SEGDEDMRRQMQEDEQKARHLEESISRLEQEIEELENTDALPTATARGSVAAPSPAPGPA 90 100 110 120 130 140 90 100 110 120 130 140 mKIAA0 ASPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVT :: :.:..:.. :.::::.:::::.. : ::.:. :::::::::::::::::::::: gi|194 LRPAPEDQRAEAVPNSQQTPVGTPKEKQISNTPLRTVDGSTMMKAAMYSVEITVEKDKVT 150 160 170 180 190 200 150 160 170 180 190 200 mKIAA0 GETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEV ::::::::::::::. ::::.::::::::::::.:: :::::.::::::::::::::::: gi|194 GETRVLSSTTVLPRELLPQGIKVYEDETKVVHAMDGTAENGIHPLSSSEVDELIHKADEV 210 220 230 240 250 260 210 220 230 240 250 260 mKIAA0 TLSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVF ::.::::..: .: :: .:...::::::::::::.:::::::::::::::::::::::.: gi|194 TLNEAGSVVGAVETRGPSEEAVRTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIF 270 280 290 300 310 320 270 280 290 300 310 320 mKIAA0 MGYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPAT---KEENQT ::::::::::::.::::::::: :::::::::: :.:::: :::::: ::: .::::. gi|194 MGYQNVEDEAETQKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPATEGSREENQV 330 340 350 360 370 380 330 340 350 mKIAA0 GPTTTPSDTQDLDMKKPRCRCCSVM :: . .. ::::::: ::.:::.: gi|194 GPEAPAAEPQDLDMKKQRCKCCSIM 390 400 410 >>gi|73987598|ref|XP_542216.2| PREDICTED: similar to Par (394 aa) initn: 1481 init1: 1145 opt: 1484 Z-score: 1435.9 bits: 274.3 E(): 2.8e-71 Smith-Waterman score: 1560; 72.113% identity (85.352% similar) in 355 aa overlap (1-350:52-394) 10 20 30 mKIAA0 QLEDDRRQLQYLKSKALRERWLLEGTPSSA ::::::::::.:: :: : :::::::.: gi|739 LAAETTSQQERLQAIAEKRRRQAEVENKRRQLEDDRRQLQHLK--ALGEPCLLEGTPSGA 30 40 50 60 70 40 50 60 70 80 mKIAA0 SEGDEDMRKQMQEDEQKARGLEESITR-LEKEIDVLEFGESAPAASKENSAAPSPGRPQS ::: :..:.:.:: .:::: :.::.. :.:::.::: . :.:. . :::::.. . gi|739 SEGGENLRSQFQEADQKARLLKESFSSWLQKEIEVLEDAGPLPTAG-DAPAAPSPAKAH- 80 90 100 110 120 130 90 100 110 120 130 140 mKIAA0 ASPAKEEQKSETLVNAQQTPLGTPKENRTS-TPVRSPGGSTMMKAAMYSVEITVEKDKVT :.:.::..::.: : .:.:.: ::::. :::::::::::::::::::::: gi|739 --------KAEVLVDSQQSPPGPHSETRASNTPVRTAEGSTMMKAAMYSVEITVEKDKVT 140 150 160 170 180 150 160 170 180 190 200 mKIAA0 GETRVLSSTTVLPRDPLPQGVKVYEDETKVVHAVDGIAENGIQPLSSSEVDELIHKADEV ::::::::::.:::.:::::.::::::::::::::: :::::.::::::::::::::::: gi|739 GETRVLSSTTLLPREPLPQGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEV 190 200 210 220 230 240 210 220 230 240 250 260 mKIAA0 TLSEAGSTAGPAEPRGLAEDVTRTTPSRREITGVEAQPGEATSGPPGIQPGQEPPVTMVF :::::::::: :: :: ... ..:::::::::::.:::::::::::::::::::::::.: gi|739 TLSEAGSTAGTAETRGASREPVQTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIF 250 260 270 280 290 300 270 280 290 300 310 320 mKIAA0 MGYQNVEDEAETKKVLGLQDTIKAELVVIEDAATPREPAPLNGSAAELPAT---KEENQT :::::::::::..::::::::: :::::::::: :.:::: :::::: : : .::::. gi|739 MGYQNVEDEAESQKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPPTAGSREENQV 310 320 330 340 350 360 330 340 350 mKIAA0 GPTTTPSDTQDLDMKKPRCRCCSVM :: . :: :::: :: ::.:::.: gi|739 GPEAPASDPQDLDTKKQRCKCCSIM 370 380 390 350 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 18:40:41 2009 done: Fri Mar 13 18:46:44 2009 Total Scan time: 832.910 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]