FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4010.ptfa, 352 aa
 vs ./tmplib.26680 library

1768665 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.4751+/-0.00367; mu= 19.9328+/- 0.247
 mean_var=65.5995+/-15.139, 0's: 0 Z-trim: 1  B-trim: 4 in 1/35
 Lambda= 0.1584

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0089  ( 363 res)   mfj52294                   ( 363) 1756  410 1.3e-115


>>mKIAA0089  ( 363 res)   mfj52294                        (363 aa)
 initn: 1756 init1: 1756 opt: 1756  Z-score: 2168.2  bits: 409.7 E(): 1.3e-115
Smith-Waterman score: 1756;  73.623% identity (73.623% ungapped) in 345 aa overlap (8-352:19-363)

                          10        20        30        40         
mKIAA4            SSTMAGKKVCIVGSGNWGSAIAKIVGSNAGRLAHFDPRVTMWVFEEDIG
                         :::::::::::::.:::.:::.  : .:.  : :::::: ..
mKIAA0 EEGCVQQRSGLAMAAAPLKVCIVGSGNWGSAVAKIIGSNVKTLQKFSSTVKMWVFEETVN
               10        20        30        40        50        60

      50        60        70        80        90       100         
mKIAA4 GRKLTEIINTQHENVKYLPGHKLPPNVVAIPDVVQAATGADILVFVVPHQFIGKICDQLK
       :::::.:::..::::::::::::: ::::.:.. .:.  ::.::::.::::: ::::.. 
mKIAA0 GRKLTDIINNDHENVKYLPGHKLPENVVAVPNLSEAVQDADLLVFVIPHQFIHKICDEIT
               70        80        90       100       110       120

     110       120       130       140       150       160         
mKIAA4 GHLKANTIGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVAEEKFCETTI
       :..  ...::.::::.::::.::::::..: :..:: .::::::::::::: ::::::::
mKIAA0 GRVPEKALGITLIKGIDEGPDGLKLISDIIREKMGIDISVLMGANIASEVAAEKFCETTI
              130       140       150       160       170       180

     170       180       190       200       210       220         
mKIAA4 GCKDPAQGQLLKDLMQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAA
       : :   .: :.:.:.::::::::::...::::.::::::::::::::::::  :::::::
mKIAA0 GSKVMQNGLLFKELLQTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAA
              190       200       210       220       230       240

     230       240       250       260       270       280         
mKIAA4 VIRLGLMEMIAFAKLFCSGIVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQ
       ::::::::::::::.::.: ::.::::::::::::::::::::::.::::::::::.::.
mKIAA0 VIRLGLMEMIAFAKIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEE
              250       260       270       280       290       300

     290       300       310       320       330       340         
mKIAA4 LEKEMLNGQKLQGPQTARELHSILQHKGLVDKFPLFTAVYKVCYEGQPVGEFIRCLQNHP
       ::::.:::::::::::. :.. ::..:::.::::::::::..::::.:: ... :::.::
mKIAA0 LEKELLNGQKLQGPQTSAEVYRILRQKGLLDKFPLFTAVYQICYEGRPVTQMLSCLQSHP
              310       320       330       340       350       360

     350  
mKIAA4 EHM
       ::.
mKIAA0 EHI
          




352 residues in 1 query   sequences
1768665 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:10 2006 done: Mon Mar 27 10:59:11 2006
 Scan time:  0.550 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]