FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1194.ptfa, 376 aa
 vs ./tmplib.26680 library

1768641 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.3887+/-0.00373; mu= 20.3990+/- 0.250
 mean_var=66.5505+/-15.324, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1572

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0759  ( 166 res)   mbp04135                   ( 166)  119   35  0.0034


>>mKIAA0759  ( 166 res)   mbp04135                        (166 aa)
 initn: 230 init1:  99 opt: 119  Z-score: 149.6  bits: 35.2 E(): 0.0034
Smith-Waterman score: 257;  30.198% identity (36.970% ungapped) in 202 aa overlap (34-235:2-166)

            10        20        30        40        50        60   
mKIAA1 PTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETE
                                     :::.::   ..::.   . ::. ::::. .
mKIAA0                              ILNWNYRFANLMQEFQHWDPDILCLQEVQED
                                            10        20        30 

            70        80        90       100       110       120   
mKIAA1 QYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQ
       .:.  .   :.  :.. :.. ..  .:         ::::. .:  .: :.    ::. .
mKIAA0 HYWEQLEPSLRMMGFTCFYKRRTGCKT---------DGCAVCYKPTRFRLLCASPVEYFR
              40        50                 60        70        80  

           130       140       150       160       170       180   
mKIAA1 LAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANAHMHW
              : : .:::    ::.:...::.    :.  . :.  ..     . :::.:. .
mKIAA0 ------PGLE-LLNR----DNVGLVLLLQ---PLVPEGLGQVSVAP----LCVANTHVLY
                    90           100          110           120    

           190       200       210       220       230       240   
mKIAA1 DPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSGVVEY
       .:. .::::.:  ..:.::    ::..:   .:   .:   :..::.  ..:        
mKIAA0 NPRRGDVKLAQMAILLAEV----DKVARLSDGS---HC---PIILCGAATQL        
          130       140           150             160              

           250       260       270       280       290       300   
mKIAA1 LSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYTNYTF




376 residues in 1 query   sequences
1768641 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:38:07 2006 done: Mon Mar 27 10:38:07 2006
 Scan time:  0.590 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]