# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbj00606.fasta.nr -Q ../query/mKIAA1194.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1194, 376 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920830 sequences Expectation_n fit: rho(ln(x))= 4.8347+/-0.00018; mu= 11.1806+/- 0.010 mean_var=62.7458+/-12.394, 0's: 25 Z-trim: 30 B-trim: 2952 in 1/64 Lambda= 0.161913 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|34980912|gb|AAH57190.1| Cnot6 protein [Mus musc ( 374) 2504 593.5 2.4e-167 gi|149052413|gb|EDM04230.1| similar to CCR4, isofo ( 382) 2504 593.6 2.4e-167 gi|29612526|gb|AAH49984.1| Cnot6 protein [Mus musc ( 399) 2504 593.6 2.5e-167 gi|148701791|gb|EDL33738.1| CCR4-NOT transcription ( 457) 2504 593.6 2.8e-167 gi|149052414|gb|EDM04231.1| similar to CCR4, isofo ( 521) 2504 593.6 3.1e-167 gi|148701793|gb|EDL33740.1| CCR4-NOT transcription ( 524) 2504 593.6 3.1e-167 gi|82178513|sp|Q5BJ41.1|CNOT6_XENLA RecName: Full= ( 552) 2504 593.7 3.2e-167 gi|46395892|sp|Q8K3P5.2|CNOT6_MOUSE RecName: Full= ( 557) 2504 593.7 3.2e-167 gi|21654885|gb|AAK85707.1| CCR4 [Mus musculus] ( 557) 2488 589.9 4.3e-166 gi|73970323|ref|XP_856050.1| PREDICTED: similar to ( 382) 2462 583.7 2.2e-164 gi|73970327|ref|XP_856129.1| PREDICTED: similar to ( 461) 2462 583.8 2.5e-164 gi|73970321|ref|XP_538584.2| PREDICTED: similar to ( 557) 2462 583.9 2.9e-164 gi|151556290|gb|AAI50117.1| CNOT6 protein [Bos tau ( 557) 2461 583.6 3.4e-164 gi|194219488|ref|XP_001500898.2| PREDICTED: CCR4-N ( 557) 2452 581.5 1.5e-163 gi|119574139|gb|EAW53754.1| CCR4-NOT transcription ( 382) 2441 578.8 6.4e-163 gi|114603887|ref|XP_518159.2| PREDICTED: CCR4-NOT ( 526) 2441 578.9 8.3e-163 gi|46396033|sp|Q9ULM6.2|CNOT6_HUMAN RecName: Full= ( 557) 2441 579.0 8.7e-163 gi|126291655|ref|XP_001381153.1| PREDICTED: simila ( 557) 2441 579.0 8.7e-163 gi|118097495|ref|XP_414612.2| PREDICTED: similar t ( 563) 2423 574.8 1.6e-161 gi|149412126|ref|XP_001505680.1| PREDICTED: simila ( 565) 2382 565.2 1.2e-158 gi|37194691|gb|AAH58309.1| CCR4-NOT transcription ( 557) 2211 525.2 1.3e-146 gi|30047751|gb|AAH50504.1| Cnot6 protein [Danio re ( 566) 2206 524.1 2.9e-146 gi|157422796|gb|AAI53318.1| Zgc:171797 protein [Da ( 558) 2152 511.4 1.8e-142 gi|74001679|ref|XP_857234.1| PREDICTED: similar to ( 551) 2035 484.1 3e-134 gi|74001681|ref|XP_857276.1| PREDICTED: similar to ( 556) 2035 484.1 3.1e-134 gi|57109236|ref|XP_544939.1| PREDICTED: similar to ( 550) 2015 479.4 7.7e-133 gi|119626223|gb|EAX05818.1| CCR4-NOT transcription ( 528) 2014 479.2 8.8e-133 gi|109074392|ref|XP_001092697.1| PREDICTED: simila ( 550) 2014 479.2 9.1e-133 gi|166216089|sp|Q96LI5.2|CNO6L_HUMAN RecName: Full ( 555) 2014 479.2 9.2e-133 gi|114594078|ref|XP_523084.2| PREDICTED: similar t ( 795) 2014 479.3 1.2e-132 gi|194209043|ref|XP_001491851.2| PREDICTED: CCR4-N ( 563) 2010 478.3 1.8e-132 gi|126330915|ref|XP_001362576.1| PREDICTED: simila ( 735) 2008 477.9 3e-132 gi|194382600|dbj|BAG64470.1| unnamed protein produ ( 555) 2003 476.6 5.4e-132 gi|149639454|ref|XP_001506990.1| PREDICTED: simila ( 606) 2003 476.7 5.8e-132 gi|26326093|dbj|BAC26790.1| unnamed protein produc ( 492) 1987 472.9 6.6e-131 gi|148688416|gb|EDL20363.1| CCR4-NOT transcription ( 542) 1987 472.9 7.1e-131 gi|17391192|gb|AAH18506.1| CCR4-NOT transcription ( 550) 1987 472.9 7.2e-131 gi|166216090|sp|Q8VEG6.2|CNO6L_MOUSE RecName: Full ( 555) 1987 472.9 7.3e-131 gi|148688415|gb|EDL20362.1| CCR4-NOT transcription ( 568) 1987 472.9 7.4e-131 gi|224049123|ref|XP_002195833.1| PREDICTED: CCR4-N ( 561) 1983 472.0 1.4e-130 gi|82180429|sp|Q5XH73.1|CN6LB_XENLA RecName: Full= ( 550) 1980 471.3 2.2e-130 gi|118089947|ref|XP_001233492.1| PREDICTED: simila ( 559) 1971 469.2 9.7e-130 gi|118089945|ref|XP_420472.2| PREDICTED: similar t ( 549) 1969 468.7 1.3e-129 gi|169208705|ref|XP_001716554.1| PREDICTED: hypoth ( 558) 1953 465.0 1.8e-128 gi|169208972|ref|XP_001719018.1| PREDICTED: simila ( 567) 1953 465.0 1.8e-128 gi|82185098|sp|Q6IR85.1|CN6LA_XENLA RecName: Full= ( 550) 1951 464.5 2.5e-128 gi|166215964|sp|A2BHJ4.1|CNO6L_DANRE RecName: Full ( 559) 1909 454.7 2.2e-125 gi|63100861|gb|AAH95634.1| CCR4-NOT transcription ( 559) 1905 453.7 4.3e-125 gi|6453600|emb|CAB61415.1| hypothetical protein [H ( 348) 1862 443.6 3.1e-122 gi|170285250|gb|AAI61170.1| LOC100145505 protein [ ( 523) 1849 440.6 3.5e-121 >>gi|34980912|gb|AAH57190.1| Cnot6 protein [Mus musculus (374 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3160.9 bits: 593.5 E(): 2.4e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:2-374) 10 20 30 40 50 60 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 RPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEV 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 ETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 FNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 FNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANAH 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 MHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 MHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSGV 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 VEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 VEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYTN 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 YTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|349 YTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLELL 300 310 320 330 340 350 370 mKIAA1 LPFLPQVNGIHLPGRR :::::::::::::::: gi|349 LPFLPQVNGIHLPGRR 360 370 >>gi|149052413|gb|EDM04230.1| similar to CCR4, isoform C (382 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3160.7 bits: 593.6 E(): 2.4e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:10-382) 10 20 30 40 50 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADI ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADI 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 ISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLV 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 QKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 QKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNS 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 LPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENG 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 LMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLF 310 320 330 340 350 360 360 370 mKIAA1 AQLELLLPFLPQVNGIHLPGRR :::::::::::::::::::::: gi|149 AQLELLLPFLPQVNGIHLPGRR 370 380 >>gi|29612526|gb|AAH49984.1| Cnot6 protein [Mus musculus (399 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3160.5 bits: 593.6 E(): 2.5e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:27-399) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWD :::::::::::::::::::::::::::::::::: gi|296 IHIYPVSTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWD 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 YRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|296 YRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERK 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 HVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|296 HVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKEL 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 IEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|296 IEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSV 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA1 LGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|296 LGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMT 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA1 NGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|296 NGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENN 310 320 330 340 350 360 340 350 360 370 mKIAA1 ISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::: gi|296 ISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 370 380 390 >>gi|148701791|gb|EDL33738.1| CCR4-NOT transcription com (457 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3159.6 bits: 593.6 E(): 2.8e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:85-457) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWA :::::::::::::::::::::::::::::: gi|148 LNYLLDNLSVSTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWA 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 120 130 140 150 160 170 100 110 120 130 140 150 mKIAA1 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL 180 190 200 210 220 230 160 170 180 190 200 210 mKIAA1 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL 240 250 260 270 280 290 220 230 240 250 260 270 mKIAA1 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK 300 310 320 330 340 350 280 290 300 310 320 330 mKIAA1 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL 360 370 380 390 400 410 340 350 360 370 mKIAA1 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::::::: gi|148 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 420 430 440 450 >>gi|149052414|gb|EDM04231.1| similar to CCR4, isoform C (521 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3158.8 bits: 593.6 E(): 3.1e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:149-521) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWA :::::::::::::::::::::::::::::: gi|149 LNYLLDNLSVSTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWA 120 130 140 150 160 170 40 50 60 70 80 90 mKIAA1 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 180 190 200 210 220 230 100 110 120 130 140 150 mKIAA1 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL 240 250 260 270 280 290 160 170 180 190 200 210 mKIAA1 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL 300 310 320 330 340 350 220 230 240 250 260 270 mKIAA1 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK 360 370 380 390 400 410 280 290 300 310 320 330 mKIAA1 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL 420 430 440 450 460 470 340 350 360 370 mKIAA1 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::::::: gi|149 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 480 490 500 510 520 >>gi|148701793|gb|EDL33740.1| CCR4-NOT transcription com (524 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3158.8 bits: 593.6 E(): 3.1e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:152-524) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWA :::::::::::::::::::::::::::::: gi|148 LNYLLDNLSVSTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWA 130 140 150 160 170 180 40 50 60 70 80 90 mKIAA1 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 190 200 210 220 230 240 100 110 120 130 140 150 mKIAA1 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL 250 260 270 280 290 300 160 170 180 190 200 210 mKIAA1 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL 310 320 330 340 350 360 220 230 240 250 260 270 mKIAA1 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK 370 380 390 400 410 420 280 290 300 310 320 330 mKIAA1 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL 430 440 450 460 470 480 340 350 360 370 mKIAA1 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::::::: gi|148 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 490 500 510 520 >>gi|82178513|sp|Q5BJ41.1|CNOT6_XENLA RecName: Full=CCR4 (552 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3158.5 bits: 593.7 E(): 3.2e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:180-552) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWA :::::::::::::::::::::::::::::: gi|821 LNYLLDNLSVSTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWA 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA1 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|821 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 210 220 230 240 250 260 100 110 120 130 140 150 mKIAA1 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|821 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL 270 280 290 300 310 320 160 170 180 190 200 210 mKIAA1 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|821 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL 330 340 350 360 370 380 220 230 240 250 260 270 mKIAA1 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|821 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK 390 400 410 420 430 440 280 290 300 310 320 330 mKIAA1 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|821 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL 450 460 470 480 490 500 340 350 360 370 mKIAA1 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::::::: gi|821 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 510 520 530 540 550 >>gi|46395892|sp|Q8K3P5.2|CNOT6_MOUSE RecName: Full=CCR4 (557 aa) initn: 2504 init1: 2504 opt: 2504 Z-score: 3158.4 bits: 593.7 E(): 3.2e-167 Smith-Waterman score: 2504; 100.000% identity (100.000% similar) in 373 aa overlap (4-376:185-557) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWA :::::::::::::::::::::::::::::: gi|463 DNLSGTAKRISTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWA 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA1 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 220 230 240 250 260 270 100 110 120 130 140 150 mKIAA1 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL 280 290 300 310 320 330 160 170 180 190 200 210 mKIAA1 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL 340 350 360 370 380 390 220 230 240 250 260 270 mKIAA1 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK 400 410 420 430 440 450 280 290 300 310 320 330 mKIAA1 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|463 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL 460 470 480 490 500 510 340 350 360 370 mKIAA1 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::::::: gi|463 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 520 530 540 550 >>gi|21654885|gb|AAK85707.1| CCR4 [Mus musculus] (557 aa) initn: 2488 init1: 2488 opt: 2488 Z-score: 3138.2 bits: 589.9 E(): 4.3e-166 Smith-Waterman score: 2488; 99.732% identity (99.732% similar) in 373 aa overlap (4-376:185-557) 10 20 30 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWA ::::::::::::: :::::::::::::::: gi|216 DNLSGTAKRISTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLGDKYATRQLYGYCPSWA 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA1 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 LNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSE 220 230 240 250 260 270 100 110 120 130 140 150 mKIAA1 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 QERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEL 280 290 300 310 320 330 160 170 180 190 200 210 mKIAA1 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 RKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSL 340 350 360 370 380 390 220 230 240 250 260 270 mKIAA1 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 KSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGK 400 410 420 430 440 450 280 290 300 310 320 330 mKIAA1 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|216 NGMTNGRITHGFKLKSAYENGLMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWL 460 470 480 490 500 510 340 350 360 370 mKIAA1 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR ::::::::::::::::::::::::::::::::::::::::::: gi|216 VENNISGCPHPLIPSDHFSLFAQLELLLPFLPQVNGIHLPGRR 520 530 540 550 >>gi|73970323|ref|XP_856050.1| PREDICTED: similar to CCR (382 aa) initn: 2462 init1: 2462 opt: 2462 Z-score: 3107.7 bits: 583.7 E(): 2.2e-164 Smith-Waterman score: 2462; 98.391% identity (99.464% similar) in 373 aa overlap (4-376:10-382) 10 20 30 40 50 mKIAA1 VIFPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADI ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADI 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 ISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLV 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 QKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLI 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNS :::::::::::::::::::::::::::::::::::::.:.:::::: ::::::::::::: gi|739 LVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLQSSVLGEFGTIPLVLCADLNS 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 LPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENG ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::.: gi|739 LPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYESG 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 LMPYTNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLF ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|739 LMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLF 310 320 330 340 350 360 360 370 mKIAA1 AQLELLLPFLPQVNGIHLPGRR :::::::::::::::::::::: gi|739 AQLELLLPFLPQVNGIHLPGRR 370 380 376 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 03:41:38 2009 done: Fri Mar 13 03:47:46 2009 Total Scan time: 839.830 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]