FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0394.ptfa, 351 aa
 vs ./tmplib.26680 library

1768666 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.1531+/-0.00561; mu= 14.7038+/- 0.375
 mean_var=175.3804+/-41.917, 0's: 0 Z-trim: 7  B-trim: 122 in 1/35
 Lambda= 0.0968

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0290  ( 512 res)   mth02050                   ( 512)  328   58 1.8e-09


>>mKIAA0290  ( 512 res)   mth02050                        (512 aa)
 initn: 281 init1: 171 opt: 328  Z-score: 262.3  bits: 57.6 E(): 1.8e-09
Smith-Waterman score: 328;  29.297% identity (31.780% ungapped) in 256 aa overlap (87-330:4-251)

         60        70        80        90       100       110      
mKIAA0 PHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLKGKQMQKEMSEFI
                                     ::. .  :::.: .   .:    ::...::
mKIAA0                            HPLQGDKN-HGFEVLYHCVKQGPVATKELADFI
                                           10        20        30  

        120       130       140       150       160       170      
mKIAA0 RERIKIEEEYAKNLAKLSQNSLAAQEEGSLGEAWAQVKKSLADEAEVHLKFSAKLHSEVE
       ::: .::: :.: .::::. .  .   :...  :   . :    :  ::... ::: .. 
mKIAA0 RERANIEETYSKAMAKLSKLASNGTPMGTFAPLWEVFRVSSDKLALCHLELTRKLH-DLL
             40        50        60        70        80         90 

        180       190          200       210       220       230   
mKIAA0 KPLMNFRENFKKDMKKCDHHI---ADLRKQLASRYASVEKARKALTERQKDLEMKTQQLE
       : .. . :.  :  ::: ...   .:  ..:..    . :.:.    :  :::      .
mKIAA0 KDVLRYGEEQLKTHKKCKEEVLGTVDAVQMLSGVGQLLPKSRENYLSRCMDLE------R
             100       110       120       130       140           

           240       250       260       270       280       290   
mKIAA0 IKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTLELERLEVERVEM
       ..  : ..... ::. :: .:.:.: : :: ::.:.. .  .:. ..:... .:  ... 
mKIAA0 LRRENTSQKEMDKAETKSKKAADSLRRSVDKYNSARADFEIKMLDSALRFQAMEEAHLQH
         150       160       170       180       190       200     

           300       310                320       330       340    
mKIAA0 IRQHLCQYTQLRHETDM--------FNQSTVE-PVDQLLRKVDPAKDRELWVREHKTGNI
       ..  : .:..  ..: .        :.:.. .  ::.::::   .:              
mKIAA0 MKALLGSYAHSVEDTHVQIGQVHEEFKQNVENVTVDMLLRKFAESKGTGREKPGPLDFDA
         210       220       230       240       250       260     

          350                                                      
mKIAA0 RPVDMEI                                                     
                                                                   
mKIAA0 YSSAALQEAMKRLRGAKAFRLPGLSRREGISRGPSPVVLGSQDALPVATAFTEYVHAYFR
         270       280       290       300       310       320     




351 residues in 1 query   sequences
1768666 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:19:45 2006 done: Mon Mar 27 10:19:46 2006
 Scan time:  0.550 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]