FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0044.ptfa, 458 aa
 vs ./tmplib.26680 library

1768559 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.1251+/-0.00534; mu= 8.8925+/- 0.356
 mean_var=130.4297+/-29.751, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1123

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4006  ( 502 res)   mpj03492                   ( 502) 1920  322 5.4e-89


>>mKIAA4006  ( 502 res)   mpj03492                        (502 aa)
 initn: 1868 init1: 1529 opt: 1920  Z-score: 1690.0  bits: 322.1 E(): 5.4e-89
Smith-Waterman score: 1920;  63.578% identity (65.121% ungapped) in 464 aa overlap (1-457:7-466)

                      10        20         30           40         
mKIAA0       GSGG-GRRQGRRRRPAPAMPNKNKKEKEP-PKPV---KSGKGPKEGQDTAETEI
             :.:: . : .   : .: .:.    .  : : :.   .:   :.  ......  
mKIAA4 KHCRYRGTGGTSPRTAVVARGSPPLPGPPPVRPGPSPAPAAAPSSQPTPRSHRSSSDSSP
               10        20        30        40        50        60

      50        60        70         80        90        100       
mKIAA0 ASRKNSLTVVQSSTSTKIKVP-IPQPVVVPVKKDKRQNSSRFNASNNR-ELQKLPSLKDV
       .. . ... . ..  .  ::  . .  :  ... . :.::.: ....  ::  :: ::::
mKIAA4 GASSRDMSSAPTTPPSVDKVDGFSRKSVRKARQKRSQSSSQFRSQGKPIELTPLPLLKDV
               70        80        90       100       110       120

       110       120       130       140       150       160       
mKIAA0 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP
       : ..: .::..::.::::.:::. : ::::: :: ::..:.:.:.::: .:. .::  ::
mKIAA4 PTSEQPELFLKKLQQCCVIFDFM-DTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYP
              130       140        150       160       170         

       170       180       190       200       210       220       
mKIAA0 EAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPN
       :.:.: . :.:::::::..    :::::::::::::.:::::::::::.::::: .:::.
mKIAA4 EVVRMVSCNIFRTLPPSDS---NEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPS
     180       190          200       210       220       230      

       230       240       250       260       270       280       
mKIAA0 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY
       :::::::::::::::::::::::::::.:::.:::::::::::::.::::::::: ::.:
mKIAA4 IAKKYIDQKFVLQLLELFDSEDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVY
        240       250       260       270       280       290      

       290       300       310       320       330       340       
mKIAA0 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQ
       :::: ::.::::::::::::::::::: ::: ::.:::.::: :.:::..: :::::.::
mKIAA4 ETEHFNGVAELLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQ
        300       310       320       330       340       350      

       350       360       370       380       390       400       
mKIAA0 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAK
       ::::: .:::::. .:.:.:::: : ::::::.::::::::::::.::::.::::.:.::
mKIAA4 FLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAK
        360       370       380       390       400       410      

       410       420       430       440       450                 
mKIAA0 CVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNK         
       :::::::::::::::::::::::::: .:.  :::::: :::: :: :::          
mKIAA4 CVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNV
        420       430       440       450       460       470      

mKIAA4 LKAFMEMNSTMFDELTATYKSDRQRE
        480       490       500  




458 residues in 1 query   sequences
1768559 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:07 2006 done: Mon Mar 27 10:11:08 2006
 Scan time:  0.660 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]