FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1848.ptfa, 408 aa vs ./tmplib.26680 library 1768609 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.2416+/-0.00521; mu= 7.6628+/- 0.348 mean_var=130.5365+/-29.827, 0's: 0 Z-trim: 3 B-trim: 2 in 1/35 Lambda= 0.1123 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0491 ( 396 res) mni11136 ( 396) 904 157 1.6e-39 >>mKIAA0491 ( 396 res) mni11136 (396 aa) initn: 1197 init1: 903 opt: 904 Z-score: 801.8 bits: 157.3 E(): 1.6e-39 Smith-Waterman score: 1495; 58.561% identity (64.481% ungapped) in 403 aa overlap (8-408:29-396) 10 20 30 mKIAA1 LWGRRGGPAYGRAMDFNMKKLASDAGIFFTRAVQFTEEK : ::::.::::.::: :..::::::::: mKIAA0 RRRRRPAPQPGRGAPRLPASAAGGSARLPPGMNIMDFNVKKLAADAGTFLSRAVQFTEEK 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 FGQAEKTELDAHFENLLARADSTKNWTERILRQTEVLLQPNPSARVEEFLYEKLDRKVPS .:::::::::::.::::..:. :: :::.:..::::::::::.::.:::.:::::::.:: mKIAA0 LGQAEKTELDAHLENLLSKAECTKIWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPS 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 RVTNGELLAQYMAEAASELGPSTPYGKTLIKVSEAEKRLGAAERDFIHTASLSFLTPLRN :..: :::.::: .:..:.::.: ::..::: .:..::.:.:.:..:.:..:.::::::: mKIAA0 RINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRIGTADRELIQTSALNFLTPLRN 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 FLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATTVPDFQETRPRNYILSASA :.:::.:::.:::.::::.:::::: :.:::::::::.:... mKIAA0 FIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSS------------------ 190 200 210 220 220 230 240 250 260 270 mKIAA1 SAVSNDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVKSQTTYYAQ :::::..:.:::::::.::::::::::::..:::::..::..: ::::: mKIAA0 -----------EQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQ 230 240 250 260 270 280 290 300 310 320 330 mKIAA1 CYRHMLDLQKQLGRFPGTFVGTTEPASPPLSSTSPTTTAATMPVVPTGAVLAPPEEAALC ::..::::::::: ::........ .: .:. : . . :. : . . : mKIAA0 CYQYMLDLQKQLGSFPSNYLSNNNQ-----TSGTPVPYALSNAIGPS-AQASTGSLVITC 280 290 300 310 320 340 350 360 370 380 390 mKIAA1 LEEVA--PPASGTRKARVLYDYEAADSSELALLADELITVYSLPGMDPDWLIGERGNKKG .. .:..:::::::::.::.:.::.:::::.:::.:. ::: :::.:::::.:: mKIAA0 PSNLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKG 330 340 350 360 370 380 400 mKIAA1 KVPVTYLELLS :::.::::::. mKIAA0 KVPITYLELLN 390 408 residues in 1 query sequences 1768609 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:54:24 2006 done: Mon Mar 27 10:54:25 2006 Scan time: 0.650 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]