FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0282.ptfa, 831 aa vs ./tmplib.26680 library 1768186 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.6519+/-0.00597; mu= 3.7506+/- 0.398 mean_var=182.7271+/-42.176, 0's: 0 Z-trim: 6 B-trim: 11 in 1/35 Lambda= 0.0949 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4043 ( 522 res) mic35030 ( 522) 306 54 4e-08 mKIAA0517 ( 787 res) mfj13077 ( 787) 216 42 0.00028 >>mKIAA4043 ( 522 res) mic35030 (522 aa) initn: 913 init1: 297 opt: 306 Z-score: 238.2 bits: 54.4 E(): 4e-08 Smith-Waterman score: 1002; 45.431% identity (58.389% ungapped) in 383 aa overlap (33-342:23-393) 10 20 30 40 50 60 mKIAA0 GEGATTAAAGQGAGHHRPIGCFARSGPLRRSRCCLASSQVPMEEMEEELKCPVCGSFYRE :: ::.. . ::::::::::::..:: mKIAA4 LKSADIASPAALVFGALTILGWSRAALAAGAA----MEEELKCPVCGSLFRE 10 20 30 40 70 80 90 mKIAA0 PIILPCSHNLCQACARNILVQTPESE-----------------SPQSRRAS------GSG :::::::::.: :::.: ::::..: .: .. :. :.: mKIAA4 PIILPCSHNVCLPCARTIAVQTPDGEQHLPPPLLLSRGAAAAATPPDQDAAAGATSGGAG 50 60 70 80 90 100 100 110 120 130 140 150 mKIAA0 VSDYDYLD---------LDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMP .. : ::.:::::.::::::: :: ::::::::.: . mKIAA4 ANTAGGLGGGATGGGDHADKLSLYSETDSGYGSY--------TPSLKSPNGVRVLPMVPA 110 120 130 140 150 160 160 170 180 190 200 mKIAA0 PPPTHLSPALAPVPRNSC-----ITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSK :: . . : . . . : ::::::::: :: :::::: .::.:::...::::.. mKIAA4 PPGSSAAAARGAACSSLCSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEGIVQRYQQGR 170 180 190 200 210 220 210 220 230 240 250 mKIAA0 -----AAALK----CQLCEKAPKE-ATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLV-- ::: ::::...: : :...::::::.:: :.:.::: :::.:::::: mKIAA4 GVVPGAAAAPAVAICQLCDRTPPEPAATLCEQCDVLYCATCQLKCHPSRGPFAKHRLVQP 230 240 250 260 270 280 260 270 280 290 mKIAA0 --PPAQGRVSRRLS---------------------PRKVSTCTDHELENHSMYCVQCKMP ::. ... .. ::: :: .::.::.:::::.:. : mKIAA4 PPPPTPPEATPAVTGTSTASSAGGCRSPGGAGASAPRKFPTCPEHEMENYSMYCVSCRSP 290 300 310 320 330 340 300 310 320 330 340 mKIAA0 VCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEA-KEFLVQLRTMVQQIQ :::.:::::.::.:::: ::: :: :: ... : . . ... . ::: ::. mKIAA4 VCYMCLEEGRHSKHEVKPLGATWKQHKVSVGCAERQPGWKKRDSLNPFLVGLRAKQESLH 350 360 370 380 390 400 350 360 370 380 390 400 mKIAA0 ENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGL mKIAA4 PSIHPSIHPIHSSVRPSTHTHTHTHTHPSFHLPTCSSFHRSMYACIHLSIHWAWVSTHAS 410 420 430 440 450 460 >>mKIAA0517 ( 787 res) mfj13077 (787 aa) initn: 117 init1: 59 opt: 216 Z-score: 169.3 bits: 42.2 E(): 0.00028 Smith-Waterman score: 236; 19.252% identity (21.822% ungapped) in 535 aa overlap (125-632:31-529) 100 110 120 130 140 150 mKIAA0 ASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPPT :. ...: ::: : :. . : mKIAA0 GRVRREPGYRGPRPPEIRVRAAAARVAQRAGSRTAGP--PCQWS----RMASEGASIP-- 10 20 30 40 50 160 170 180 190 200 210 mKIAA0 HLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPK-NRVLEGVIDRYQQSKAAALKCQL ::.. . .. : : : . .. . .: . : .. : ... .:.: . mKIAA0 --SPVVRQIDKQFLI-CSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSLTLSCPV 60 70 80 90 100 220 230 240 250 260 270 mKIAA0 CEKAP--KEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVST :... : : : . : . . . : . .. . . .. : . mKIAA0 CRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNGEDSSILETVTA-----VAAGKPLS 110 120 130 140 150 160 280 290 300 310 320 330 mKIAA0 CTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRA : .:. . .:: .:. .: .: : :.:. : . : . . ::..:. :.... : mKIAA0 CPNHDGNVMEFYCQSCETAMCRECTE-GEHAEHPTVPLKDVVEQHKASLQVQLDAVNKRL 170 180 190 200 210 340 350 360 370 380 390 mKIAA0 KEAKEFLVQLRTMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKV : : . ...:. .... . . . : : .:: ::. :: ... .. : :: mKIAA0 PEIDSALQFISEIIHQLTNQKASIVDDIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKV 220 230 240 250 260 270 400 410 420 430 440 450 mKIAA0 VRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPR ...:.. .. . .. ...... . : .. . .... :: : :: mKIAA0 LQSQLDTLLQGQESIKSCSNFTAQALNHGTETEVLLVKKQMSEKLNELADQ--DFPLHPR 280 290 300 310 320 330 460 470 480 490 mKIAA0 MTTDFDLSLDNSPLLQSIHQLDFV------------------QVKASSPVPATPILQLE- . ..:. ... : .:::.: . :. ..:. .: . . mKIAA0 ENDQLDFIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQTIIGQPMSVTITTKDKD 340 350 360 370 380 390 500 510 520 530 540 550 mKIAA0 -ECCTHNNSATLSWKQPPLSTVAADGYILELDDGSGGQFREVY-VGKETMCTVDGLHFNS : : .:. . . : ..:: :: :: :...: .. .: : :: :.. ... mKIAA0 GELCKTGNAYLTAELSTPDGSVA-DGEIL---DNKNGTYEFLYTVQKEGDFTLSLRLYDQ 400 410 420 430 440 450 560 570 580 590 600 mKIAA0 TYNA---RVKAFNKTGVSPYSKTLVLQTSEAAGAHETKPMKDTDSEEQTLPFPVPSERLP . ..:.. .. ::: .. : . .. :. ..: .... :. mKIAA0 HIRGSPFKLKVIRSADVSPTTEG-VKRRVKSPGSGHVK--------QKAVKRPASMYSTG 460 470 480 490 500 610 620 630 640 650 660 mKIAA0 LRRMSPFSSTLNLQPSFPGRSYFDFRSSPHQLSLHSSLQSLNAPGCNFETQSASYSQLVD :. .:. . : .. . ::. .: mKIAA0 KRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTSGKILIADSNNQCVQIFSNDGQFKS 510 520 530 540 550 560 831 residues in 1 query sequences 1768186 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:16:27 2006 done: Mon Mar 27 10:16:28 2006 Scan time: 0.940 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]