FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1495.ptfa, 268 aa
 vs ./tmplib.26680 library

1768749 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6237+/-0.00444; mu= 21.7750+/- 0.299
 mean_var=95.6861+/-21.842, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1311

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1016  ( 777 res)   mpg00620                   ( 777)  720  146   5e-36


>>mKIAA1016  ( 777 res)   mpg00620                        (777 aa)
 initn: 751 init1: 706 opt: 720  Z-score: 739.1  bits: 146.0 E(): 5e-36
Smith-Waterman score: 720;  56.221% identity (58.373% ungapped) in 217 aa overlap (49-262:563-774)

       20        30        40        50        60        70        
mKIAA1 NKLKQTVECEKSVPADEGNSPLSPLAWQPLENQKDQIVDQQWPESQPIIWQNEERRRSKQ
                                     : :.: .....  . .:    :: :. : .
mKIAA1 NLFPMDSGEASEFPDPSLNGQLQLETSPDREVQNDLMLQSNGSQYSP----NEIRENSPS
            540       550       560       570           580        

       80         90       100       110         120       130     
mKIAA1 IRKEY-FKYKSTRKNSSGNENEEEYDRSDGFSHGPF--GLKPRSAFSRASRQEYGAADPG
       .     .      :  ::.   :: . :     .:    :  : .: : .:.   . :: 
mKIAA1 VSPTANITAPFGLKPRSGSWCPEEVQGSLQAESSPRRPQLLSRHVFLRPQRN-LESIDPQ
      590       600       610       620       630       640        

         140       150       160       170       180       190     
mKIAA1 FTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVAS
       ::.:::::..:::.: ..:::...: :::: : .:.::::::::::::::::.:::::::
mKIAA1 FTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLANHVRPRSVAS
       650       660       670       680       690       700       

         200       210       220       230       240       250     
mKIAA1 IHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALL
       ::::::::::::::::::::::::.::.:::: .:.::::::::::.::::::.::::::
mKIAA1 IHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTVQALL
       710       720       730       740       750       760       

         260        
mKIAA1 ELPTTKASQLSMA
       .. .:::      
mKIAA1 DVTVTKALFT   
       770          




268 residues in 1 query   sequences
1768749 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:46:35 2006 done: Mon Mar 27 10:46:36 2006
 Scan time:  0.480 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]