FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0140.ptfa, 439 aa
 vs ./tmplib.26680 library

1768578 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.6106+/-0.00557; mu= 8.0866+/- 0.372
 mean_var=169.6227+/-40.804, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0985

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4017  ( 340 res)   mia37082                   ( 340)  537   88 1.3e-18


>>mKIAA4017  ( 340 res)   mia37082                        (340 aa)
 initn: 497 init1: 272 opt: 537  Z-score: 426.5  bits: 87.7 E(): 1.3e-18
Smith-Waterman score: 537;  35.370% identity (37.801% ungapped) in 311 aa overlap (18-320:20-318)

                 10        20        30         40        50       
mKIAA0   RWPVPSLGCSPVPEVLTMVMILRRSLINQGADSGAHRTF-IPELHTPKMSQGPTLLSC
                          :: .. ..: ::. :. ..:.       . :....  :.  
mKIAA4 CPVFWKSSAHRCGLRKSPAMVTLITEKLQNQSLDDLTRRACEAGPYSAEKLNKSGHLFPL
               10        20        30        40        50        60

         60        70        80        90         100       110    
mKIAA0 GI-MENDRWRDLDRKCPLQIDQPSASIWECLPEKCQ--DGSLWHQEAVTACAVTSLIKDL
        : .... :. :    :   .: ... .   :.  .  .:  :. :.     :  .   :
mKIAA4 EISVDKSPWKALRGGWPTG-SQAASGPFSVGPHGVSHTEGLKWQLESPGPMDVGHF---L
               70         80        90       100       110         

          120       130       140       150       160       170    
mKIAA0 NINDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQ-RY
       ...: .: :.:::.::.:::::  .:.. ::. ::: .::::::. :::: ::::.  . 
mKIAA4 DLHDSTGPPAAPPTKRHCRSLSEPEELARCRSPWRPGSSKVWTPISKRRCNSGGSATLQC
        120       130       140       150       160       170      

             180       190       200       210       220        230
mKIAA0 SNGV-SP-MQRSSSFSLPARANGLSSPCHQSSLHHRFGGQPCQGAPGSAPCGQAGDSW-S
        .:: .: .: .   .:: :  . ..:   : :  : ..     . ::    ..:  : :
mKIAA4 CSGVGNPTLQGTLVPGLPRRPVSPAGPT--SPLTPRPASASSGFVDGSEGSTSSGPPWLS
        180       190       200         210       220       230    

              240       250       260       270       280       290
mKIAA0 PDPHPVGGGRLDLQRSLSCSHEQFSFPEYCPPSANSTPASTPELARRSSGLARSRSQPCV
         : : ..     .: :: :.:..     : :::.:::.:::::.:.  :: : ::::::
mKIAA4 TGPCPFSS-----RRRLSLSQEHLVDTGACLPSASSTPTSTPELGRHH-GLLRCRSQPCV
          240            250       260       270        280        

              300       310       320       330       340       350
mKIAA0 LNDKKIGVKRRRPDEVQEQRPSLDLAKMAQNCQTFSSLSCLNMGVDDHSSQSPFALVSST
       :. ...  :::: ....  :::::. ::..                              
mKIAA4 LDGRRVRRKRRREEDARWTRPSLDFLKMTRVRPHLCSWVLRKPVFCLILVLE        
      290       300       310       320       330       340        




439 residues in 1 query   sequences
1768578 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:13:00 2006 done: Mon Mar 27 10:13:01 2006
 Scan time:  0.660 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]