FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0451.ptfa, 344 aa
 vs ./tmplib.26680 library

1768673 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.6667+/-0.00639; mu= 1.9788+/- 0.427
 mean_var=231.5728+/-55.066, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0843

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1124  ( 1086 res)   mfj36158                  (1086)  984  132 1.3e-31


>>mKIAA1124  ( 1086 res)   mfj36158                       (1086 aa)
 initn: 1033 init1: 542 opt: 984  Z-score: 660.1  bits: 132.2 E(): 1.3e-31
Smith-Waterman score: 1081;  50.435% identity (56.863% ungapped) in 345 aa overlap (1-343:778-1085)

                                             10        20        30
mKIAA0                               GGPCNMLHSNDHTLSFISHQPMDALCAVEI
                                     : : .... .: .:.:.:.: .:::::::.
mKIAA1 PGHVQWMAVFKDRLCVGYPSGFSLLSIQGDGPPLDLVNPTDPSLAFLSQQSFDALCAVEL
       750       760       770       780       790       800       

               40        50        60        70        80        90
mKIAA0 SNKEYLLCFNSIGIYTDCQGRRSRQQELMWPANPSSCCYNAPYLSVYSENAVDIFDVNSM
       ...::::::. .:.:.: ::::::.::::::: : .:  .  ...:::: .::.::: .:
mKIAA1 KSEEYLLCFSHMGLYVDPQGRRSRMQELMWPAAPVACSCSPTHVTVYSEYGVDVFDVRTM
       810       820       830       840       850       860       

              100       110       120       130       140       150
mKIAA0 EWIQTLPLKKVRPLNTEGSLNLLGLETIRLIYFKNKMAEGDELVVPETSDNSRKQMVRNI
       ::.::. :...::::..::::::: :  ::::::::.. :  : ::.:::::.:::.:. 
mKIAA1 EWVQTIGLRRIRPLNSDGSLNLLGCEPPRLIYFKNKFS-GTILNVPDTSDNSKKQMLRT-
       870       880       890       900        910       920      

              160       170       180       190       200       210
mKIAA0 NNKRRYSFRVPEEERMQQRREMLRDPEMRNKLISNPTNFNHIAHMGPGDGIQILKDLPMN
        .:::. :.::::::.:::::::::::.:.:.:::::::::.::::::::.:.: :::..
mKIAA1 RSKRRFVFKVPEEERLQQRREMLRDPELRSKMISNPTNFNHVAHMGPGDGMQVLMDLPLS
         930       940       950       960       970       980     

              220       230       240       250       260       270
mKIAA0 PRPQESRTVFSGSVSIPSITKSRPEPVRSMSASSGLSARSSAQNGSALKREFSGGSYNTK
         :  ..             :. : :       .::  .  ...   ..   ::::    
mKIAA1 AAPTVQEE------------KQGPTP-------AGLPRQPPSRSKPYVSWPSSGGS----
         990                         1000      1010      1020      

               280       290       300        310       320        
mKIAA0 RQP-MPSPSEGSLSSGGMDQGSDAPARDYDGE-DSDSPRHSTASNSSNLSSPPSPISPQK
        .: .: :         . . :: : .:.: : :::: .::: ::::: :.:::: ::..
mKIAA1 -EPGVPVP---------LRSMSD-PDQDFDKEPDSDSTKHSTPSNSSNPSGPPSPNSPHR
                     1030       1040      1050      1060      1070 

      330       340    
mKIAA0 TKSLSLESTDRGSWDP
       .. : .:. :. : : 
mKIAA1 SQ-LPMEGLDQPSCDA
             1080      




344 residues in 1 query   sequences
1768673 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:21:06 2006 done: Mon Mar 27 10:21:07 2006
 Scan time:  0.560 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]