FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1643.ptfa, 950 aa vs ./tmplib.26680 library 1768067 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.0057+/-0.00632; mu= 15.8103+/- 0.425 mean_var=184.4019+/-42.052, 0's: 0 Z-trim: 15 B-trim: 0 in 0/36 Lambda= 0.0944 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4212 ( 600 res) mbg08227 ( 600) 263 48 3.3e-06 mKIAA1537 ( 628 res) mbg18407 ( 628) 256 47 6.6e-06 mKIAA0981 ( 2117 res) mib04069 (2117) 262 49 7.5e-06 mKIAA0993 ( 646 res) mbg00079 ( 646) 242 46 2.5e-05 mKIAA1362 ( 1407 res) mia41047 (1407) 244 46 3.2e-05 mKIAA1255 ( 176 res) mbg10338 ( 176) 231 43 3.4e-05 mKIAA1589 ( 775 res) mbh04724 ( 775) 236 45 4.9e-05 mKIAA0647 ( 1186 res) mbg01911 (1186) 235 45 6.9e-05 mKIAA0305 ( 1536 res) mbg08215 (1536) 225 44 0.00021 mKIAA0321 ( 2548 res) mef00119 (2548) 227 44 0.00023 mKIAA4239 ( 1059 res) mfj24184 (1059) 205 41 0.0011 mKIAA1435 ( 411 res) mbp03169 ( 411) 183 37 0.0051 >>mKIAA4212 ( 600 res) mbg08227 (600 aa) initn: 195 init1: 150 opt: 263 Z-score: 203.7 bits: 48.4 E(): 3.3e-06 Smith-Waterman score: 263; 34.722% identity (38.760% ungapped) in 144 aa overlap (801-936:452-588) 780 790 800 810 820 mKIAA1 TPMATREKIRSRFHGSHDLIHRLFVCISGVADQLQTNYASDLRSILKT-LFEVMATKPET : : . . .: .:.: : .: . : : mKIAA4 GSALQLQLSQLRDQCSGLEKELKSEKEQRQALQRELQREKDTSCLLQTELQQVEGLKKEL 430 440 450 460 470 480 830 840 850 860 870 880 mKIAA1 ----DDKEKLKKVTQTLRSAALE-DCALCQETVSSSEL--AAKTRDGDFEDPPEWVPDEA :.: .:.:: . ..: : : : .. .. . :. : :. :. mKIAA4 RELQDEKAELRKVCEEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGH-----TWLKDDE 490 500 510 520 530 890 900 910 920 930 940 mKIAA1 CGFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTP : .:. :.. :::::::.::.:::. :::. :: : :::::: :. mKIAA4 ATHCKQCEKDFSISRRKHHCRNCGHIFCNTCSSNELALPSYP--KPVRVCDSCHTLLLQR 540 550 560 570 580 590 950 mKIAA1 FYSDKTGM mKIAA4 CSSTAS 600 >>mKIAA1537 ( 628 res) mbg18407 (628 aa) initn: 253 init1: 174 opt: 256 Z-score: 198.4 bits: 47.5 E(): 6.6e-06 Smith-Waterman score: 256; 35.455% identity (39.000% ungapped) in 110 aa overlap (830-936:514-616) 800 810 820 830 840 850 mKIAA1 VADQLQTNYASDLRSILKTLFEVMATKPETDDKEKLKKVTQTLRSAALE-DCALCQETVS :....::.. : ..: : ::. .. mKIAA1 DLQKEKDVLSHLRHETQKVISLKKEFLNLQDENQQLKRIYQEQEQALQELGSKLCESKLK 490 500 510 520 530 540 860 870 880 890 900 910 mKIAA1 SSEL--AAKTRDGDFEDPPEWVPDEACGFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSH ... : :. .: :. :. : :. :.. .::::::.::.:::. ::.. mKIAA1 IDDIKEANKALQGLV-----WLKDKDATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDN 550 560 570 580 590 920 930 940 950 mKIAA1 SAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKTGM ::: .. :::::: :. mKIAA1 ELPLP--SSPKPVRVCDSCHAMLIQRCSSNMP 600 610 620 >>mKIAA0981 ( 2117 res) mib04069 (2117 aa) initn: 233 init1: 233 opt: 262 Z-score: 197.4 bits: 49.1 E(): 7.5e-06 Smith-Waterman score: 262; 41.892% identity (43.056% ungapped) in 74 aa overlap (862-935:162-233) 840 850 860 870 880 890 mKIAA1 KEKLKKVTQTLRSAALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEACGFCTSCKA . .:..:.:... :.:: : : .:. mKIAA0 KAEPACGGHDPRTAVQLRSLSTVLKRLKEIMEGKSQDSDLKQ--YWMPDSQCKECYDCSE 140 150 160 170 180 900 910 920 930 940 950 mKIAA1 PFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKTGM ::..::.:::: ::.:::::: .. : .: . .:.::.: mKIAA0 KFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCRKIALSYAHSTDSNSI 190 200 210 220 230 240 mKIAA0 GEDLNALSDSTCSVSILDPSEPRTPVGSRKASRNIFLEDDLAWQSLIHPDSSNSALSTRL 250 260 270 280 290 300 >>mKIAA0993 ( 646 res) mbg00079 (646 aa) initn: 265 init1: 238 opt: 242 Z-score: 187.9 bits: 45.6 E(): 2.5e-05 Smith-Waterman score: 242; 22.053% identity (22.835% ungapped) in 263 aa overlap (678-936:373-630) 650 660 670 680 690 700 mKIAA1 AKGGDKEPERIDEAQPSDVTLPAEDASNRQEPKAPASSKCLAHTSG-PQVDTASRLQGEG : :: . : : :... ... : . mKIAA0 MNEWDTQNVIVTGHSDGVVRFWRMEFLQVPETPAPEPVEDLEMQEGCPEAQIGQQAQDDD 350 360 370 380 390 400 710 720 730 740 750 760 mKIAA1 EVKGQPEPEARKQDPEKS---PVVSGDSPRGDVAQTEHQHLLGSSSTVGSCSLDNTRLDV .. : . .:::. . : .. ::. .. :.: . :. :: mKIAA0 SSDSETEEPSVSQDPKDTSSQPSSTSHRPRAASCRATATWCTDSGSDDSRRWSDQLSLDE 410 420 430 440 450 460 770 780 790 800 810 820 mKIAA1 ATAAMPVTPMATREKIRSRFHGSHDLIHRLFVCISGVADQLQTNYASDLRSILKTLFEVM . . :. .. . :....: : . . . .:. .: . . .... . .: mKIAA0 KDGFIFVN--YSEGQTRAHLQGPLAHPHPNPIEARSYS-RLKPGYRWERQLVFRSKL-TM 470 480 490 500 510 830 840 850 860 870 880 mKIAA1 ATKPETDDKEKLKKVTQTLRSAALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEAC : . :. . .:: .: . .. : .. . . . . .:: ::. mKIAA0 HTAFDRKDNTHPAEVT-ALGVSKDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGG 520 530 540 550 560 570 890 900 910 920 930 940 mKIAA1 GFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPF :..:.. :.. .:.::::.::..::..:: .. . : .::::: .::. mKIAA0 DSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCYYSLQHER 580 590 600 610 620 630 950 mKIAA1 YSDKTGM mKIAA0 GAEDGPRNC 640 >>mKIAA1362 ( 1407 res) mia41047 (1407 aa) initn: 251 init1: 161 opt: 244 Z-score: 186.0 bits: 46.3 E(): 3.2e-05 Smith-Waterman score: 244; 28.205% identity (29.730% ungapped) in 156 aa overlap (785-936:1103-1254) 760 770 780 790 800 810 mKIAA1 SLDNTRLDVATAAMPVTPMATREKIRSRFHGSHDLIHRLFVCISGVADQLQTNYASDLR- : . : . : . : : : ..:. mKIAA1 TLMKLSRKVMQPRMFFLFNDALLYTTPMQSGMYKLNNMLSLAGMKVRKPTQEAYQNELKI 1080 1090 1100 1110 1120 1130 820 830 840 850 860 870 mKIAA1 -SILKTLFEVMATKPETDDKEKLKKVTQTLRSAALEDCALCQETVSSSELAAKTRDGDF- :. .... .. : :: :. ...... : . ..: . . : . . . mKIAA1 ESVERSFILSASSAAERDDW--LEAISSSIEEYAKKRITFCPSRSLDEDSERKEEVSPLG 1140 1150 1160 1170 1180 1190 880 890 900 910 920 930 mKIAA1 EDPPEWVPDEACGFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRY-GQVKPVR : :.:: .: : . ::. :.::::.:::: :. :::.. : ::. .: mKIAA1 AKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKGQL--AR 1200 1210 1220 1230 1240 940 950 mKIAA1 VCTHCYMFHVTPFYSDKTGM :: ::.. mKIAA1 VCEHCFQELQKLDHQLSPRVGSPGNHKSPSSALSSVLHSIPSGRKQKKIPAALKEVSANT 1250 1260 1270 1280 1290 1300 >>mKIAA1255 ( 176 res) mbg10338 (176 aa) initn: 181 init1: 181 opt: 231 Z-score: 185.6 bits: 43.3 E(): 3.4e-05 Smith-Waterman score: 231; 38.750% identity (40.789% ungapped) in 80 aa overlap (857-936:92-167) 830 840 850 860 870 880 mKIAA1 PETDDKEKLKKVTQTLRSAALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEACGFC :....: . : ..:: : : : mKIAA1 GNANLCRAIVRSGVRLGVNNNQGVNIFNYQVATKQLLFRLLDMLSKEPP-WCDGSNCYEC 70 80 90 100 110 120 890 900 910 920 930 940 mKIAA1 TSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSD : : : : :::::: ::...: .::.. :. .. ::::::. :. mKIAA1 T---AKFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS 130 140 150 160 170 950 mKIAA1 KTGM >>mKIAA1589 ( 775 res) mbh04724 (775 aa) initn: 411 init1: 227 opt: 236 Z-score: 182.7 bits: 44.9 E(): 4.9e-05 Smith-Waterman score: 236; 43.939% identity (43.939% ungapped) in 66 aa overlap (870-935:703-768) 840 850 860 870 880 890 mKIAA1 QTLRSAALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEACGFCTSCKAPFTVIRRK : : ::::. : .:. :.: : mKIAA1 TLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSK 680 690 700 710 720 730 900 910 920 930 940 950 mKIAA1 HHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKTGM ::::.::. ::..:: .: : .::::: .: mKIAA1 HHCRACGQGFCDECSHDCRAVPSRGWDHPVRVCFNCNKKPGDL 740 750 760 770 >>mKIAA0647 ( 1186 res) mbg01911 (1186 aa) initn: 232 init1: 232 opt: 235 Z-score: 180.1 bits: 45.0 E(): 6.9e-05 Smith-Waterman score: 235; 33.333% identity (36.082% ungapped) in 105 aa overlap (832-936:1065-1161) 810 820 830 840 850 860 mKIAA1 DQLQTNYASDLRSILKTLFEVMATKPETDDKEKLKKVTQTLRSAALEDCALCQETVSSSE ::. . :. . : ::: :: mKIAA0 RELQMRLDIRHCCAPPAEPPMDYEDDFTCLKESDGSDTEDFGSDHSEDCL--------SE 1040 1050 1060 1070 1080 870 880 890 900 910 920 mKIAA1 LAAKTRDGDFEDPPEWVPDEACGFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLP . . : . .::::. . : .: : . .:.::::.::..::. : . :.: mKIAA0 ASWEPVDKKETEVTRWVPDHMASHCFNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIP 1090 1100 1110 1120 1130 1140 930 940 950 mKIAA1 RYGQVKPVRVCTHCYMFHVTPFYSDKTGM :: ::. :: mKIAA0 DQQLYDPVLVCNSCYEHIQVSRARELMSQHLKKPIATASS 1150 1160 1170 1180 >>mKIAA0305 ( 1536 res) mbg08215 (1536 aa) initn: 294 init1: 186 opt: 225 Z-score: 171.6 bits: 43.8 E(): 0.00021 Smith-Waterman score: 225; 45.161% identity (46.667% ungapped) in 62 aa overlap (875-936:738-797) 850 860 870 880 890 900 mKIAA1 AALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEACGFCTSCKAPFTVIRRKHHCRS : :::: : .:.. :: .:.::::. mKIAA0 FEDGSSFVTANKDSLPENKRKESLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRA 710 720 730 740 750 760 910 920 930 940 950 mKIAA1 CGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSDKTGM :::.::. : ... : .: . : .:::. :: mKIAA0 CGKVFCGVCCNRKCKL-QYLE-KEARVCVICYETINKAQAFERMMSPGGSCLKSNHSNEC 770 780 790 800 810 820 mKIAA0 ATDQPLQETQTSSTPSPTTLPISALKQPNVEGPCSKEQKRVWFADGILPNGEVADTTKLS 830 840 850 860 870 880 >>mKIAA0321 ( 2548 res) mef00119 (2548 aa) initn: 245 init1: 119 opt: 227 Z-score: 170.8 bits: 44.4 E(): 0.00023 Smith-Waterman score: 232; 29.677% identity (33.577% ungapped) in 155 aa overlap (802-939:1727-1880) 780 790 800 810 820 mKIAA1 PMATREKIRSRFHGSHDLIHRLFVCISGVADQLQTNYAS---DLRSILK-----TLFEVM :.: . ::. :: :. ...... mKIAA0 NMKVDWATTAVQTLHQLLAGQDIGFTLDEVDSLLSRYAGKALDLPYPLREKRSDSMIHLQ 1700 1710 1720 1730 1740 1750 830 840 850 860 870 mKIAA1 ATKPETDDKEKLKKVTQTLRSAALEDCALCQETVSSSELA-AKTRDG-DF---EDPP--- ...:.: :.. ... ::: . .. : .: : .:. .: : :: mKIAA0 EPVHQASDSETLSRSSSAEFSAAAAPGSALVRSPSPKERAFPQTQPPVEFVPPETPPARD 1760 1770 1780 1790 1800 1810 880 890 900 910 920 930 mKIAA1 EWVPDEACGFC-TSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTH .:::::. . : . :. ::.. :.:::: ::.. :. ::... . . . .:.::: . mKIAA0 QWVPDETESVCMVCCREHFTMFNRRHHCRRCGRLVCGSCSTKKMVVEGFRE-NPTRVCDQ 1820 1830 1840 1850 1860 1870 940 950 mKIAA1 CYMFHVTPFYSDKTGM :: .. mKIAA0 CYSYYNKDTPEESPCQSEVPDSAKNESPPYSAVVRVPKATEVEWILSLSEEENELVRSEF 1880 1890 1900 1910 1920 1930 950 residues in 1 query sequences 1768067 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:50:17 2006 done: Mon Mar 27 10:50:18 2006 Scan time: 0.990 Display time: 0.340 Function used was FASTA [version 3.4t11 Apr 17, 2002]