FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4160.ptfa, 676 aa
 vs ./tmplib.26680 library

1768341 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 12.6080+/-0.00971; mu= -20.2518+/- 0.641
 mean_var=570.4998+/-138.998, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0537

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1528  ( 276 res)   mth01821                   ( 276) 1130  102 8.2e-23


>>mKIAA1528  ( 276 res)   mth01821                        (276 aa)
 initn: 1144 init1: 1099 opt: 1130  Z-score: 501.9  bits: 102.0 E(): 8.2e-23
Smith-Waterman score: 1130;  60.145% identity (61.710% ungapped) in 276 aa overlap (396-671:2-270)

         370       380       390       400       410       420     
mKIAA4 SIPPGVPALPVKNLNGTGPVHPALAGMTGILLCAAGLPVCLTRAPKPILHPPPVSKSDVK
                                     .: :::  .::     :    ::..    .
mKIAA1                              PFLSAAGTSACL-----PACFLPPLALLTPS
                                            10             20      

         430       440       450       460       470       480     
mKIAA4 PVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTICMERLVTASGYEGVLR
        .::.  . :.  .   :   .::.:.:.: ...:  :.::: ::::.:..::::  .  
mKIAA1 CMPGTALTSRSLPEGAPKP--EPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTD
         30        40          50        60        70        80    

         490       500       510       520       530       540     
mKIAA4 NKSVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTGTQPPGKMEF
       .:.. : .:::: .:.: .:::::.::: :::::::::::.::.:::::::::: :::: 
mKIAA1 SKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEV
           90       100       110       120       130       140    

         550       560       570       580       590       600     
mKIAA4 HLIPHSLPGFADTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLR
         .  ::::  :  :: :::.:: ::::::::.::: ::::::::.::::.. .:::::.
mKIAA1 FRFQMSLPGHEDCGTILIVYNIPHGIQGPEHPSPGKPFTARGFPRQCYLPDSPQGRKVLE
          150       160       170       180       190       200    

         610       620       630       640       650       660     
mKIAA4 LLITAWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELT
       :: .::.::::::.:::.::::.:::::::::::::.  :.::::::: .::.::::::.
mKIAA1 LLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNVTGHGYPDPNYLQNVLAELA
          210       220       230       240       250       260    

         670       
mKIAA4 AQGVSEAMAKA 
       ::::.:      
mKIAA1 AQGVTEDCLEQQ
          270      




676 residues in 1 query   sequences
1768341 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:43 2006 done: Mon Mar 27 11:03:44 2006
 Scan time:  0.870 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]