FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1638.ptfa, 955 aa vs ./tmplib.26680 library 1768062 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.4770+/-0.00377; mu= 23.0787+/- 0.252 mean_var=77.0591+/-17.601, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1461 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1179 ( 1170 res) mbg05639 (1170) 173 47 1.4e-05 >>mKIAA1179 ( 1170 res) mbg05639 (1170 aa) initn: 137 init1: 94 opt: 173 Z-score: 192.8 bits: 47.3 E(): 1.4e-05 Smith-Waterman score: 178; 21.830% identity (27.487% ungapped) in 481 aa overlap (347-755:73-526) 320 330 340 350 360 370 mKIAA1 STKLPFSHKPLLLYNGELTCQTQSGKINSIYLSTHSFLGSMKDTEPTD-LRQMLTQTLLL : . .:: ... : :. . . :.. : mKIAA1 EVMVTEGVTTVAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMWKTLSKLALE 50 60 70 80 90 100 380 390 400 410 420 430 mKIAA1 KRFSDAWDICKMLNDRTSWSELAKACLHHMEVEFAIRVSRTMGDVGTVMSLEQIKGIEDY : . . : .. ...::: . : :.: .::: .: :: :. mKIAA1 ARQLHTAERC-----FSALGHVAKARFLHETNEIADQVSREYGGEGT-----------DF 110 120 130 140 440 450 460 470 480 mKIAA1 NLLAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDLQHWDSALQLAK--------RLAP . ..:::. ....::. ..: .: :..: ..:..:. . .:. .: mKIAA1 YQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWEECIAVAEAKGHPALEKLRR 150 160 170 180 190 200 490 500 510 520 530 mKIAA1 DQIPFI----SKEYAIQL-EFTGDYVNALAHYEK-GITGDNKE---HDEVCLAG---VAQ : .. ..: : .: : :: . :.. : : :. . . : ::. : . mKIAA1 DYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELVEH 210 220 230 240 250 260 540 550 560 570 580 mKIAA1 MSIRM--GDIRRGAN---QALKHPSRVLKRDC--GAILENMK----QFS-EAAQLYE--- .. . :.. . :. . ...:.:.:. : .:... .. : :...: : mKIAA1 ITTALIKGELYERAGDLFEKIRNPQRALECYCKGNAFMKAVELARLAFPVEVVRLEEAWG 270 280 290 300 310 320 590 600 610 mKIAA1 ----KGQYYDRAASVYI--RC-----------KNWAKVGELLP----HVSS---PKIHLQ . . : : . :: :: ..: :. .: ...: :.. . mKIAA1 DHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPRVAQH 330 340 350 360 370 380 620 630 640 650 660 mKIAA1 YAKAKEAD---------GRYKEAVVAYENAKQWNSVIRIYLDHLNNPE-KAVSIVRETQS ::. .: . : :.:. : .: .:... .. .: . :. : ::.. ::. mKIAA1 YASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKV--EHGQCPRGKNVSVLYITQA 390 400 410 420 430 440 670 680 690 700 710 720 mKIAA1 LDGAKMVARFFLQLGDYGSAIQFLVLSKCNNEAFTLAQQHNKMEIYADIIGAE--DTTNE . :. : : : .. : . . :.:. ..:. .. . ..: . : .. mKIAA1 QEMEKQ--------GKYREAERLYVTVEEPDLAITMFKKHKLYDDMIRLVGKHHPDLLSD 450 460 470 480 490 730 740 750 760 770 780 mKIAA1 DYQSIALYFEGEKRHFQAGKFFLLCGQYSRALKHFLKCPSSEDNVAIEMAIETVGQAKDE . .. .:.: : .: ... : .: .: mKIAA1 THLHLGKELEAEGR-LQEAEYHYLEAQEWKATVNMYRSSGLWEEAYRVAKAHGGANAHKH 500 510 520 530 540 550 790 800 810 820 830 840 mKIAA1 LLTNQLIDHLMGESDGMPKDAKYLFRLYMALKQYREAARTAIIIAREEQSAGVFRNAHDV mKIAA1 VAYLWAKSLGGEAAVRLLNKLGLLEATIDHAADNKASVLDSTAPMSPILGRFVHNQDWEA 560 570 580 590 600 610 955 residues in 1 query sequences 1768062 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:50:12 2006 done: Mon Mar 27 10:50:13 2006 Scan time: 0.980 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]