# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbh04274.fasta.nr -Q ../query/mKIAA0943.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0943, 266 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921046 sequences Expectation_n fit: rho(ln(x))= 4.6138+/-0.000183; mu= 11.8360+/- 0.010 mean_var=61.9045+/-12.257, 0's: 39 Z-trim: 43 B-trim: 2056 in 1/63 Lambda= 0.163010 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148707985|gb|EDL39932.1| autophagy-related 4B ( ( 390) 1660 398.6 8.2e-109 gi|20071131|gb|AAH27184.1| Autophagy-related 4B (y ( 393) 1660 398.6 8.3e-109 gi|61211813|sp|Q8BGE6.2|ATG4B_MOUSE RecName: Full= ( 393) 1653 397.0 2.6e-108 gi|26324650|dbj|BAC26079.1| unnamed protein produc ( 393) 1648 395.8 5.9e-108 gi|149037474|gb|EDL91905.1| autophagy-related 4B ( ( 319) 1591 382.3 5.4e-104 gi|221045722|dbj|BAH14538.1| unnamed protein produ ( 319) 1557 374.3 1.4e-101 gi|61212253|sp|Q9Y4P1.1|ATG4B_HUMAN RecName: Full= ( 393) 1557 374.4 1.6e-101 gi|78101773|pdb|2CY7|A Chain A, The Crystal Struct ( 396) 1557 374.4 1.6e-101 gi|88192732|pdb|2D1I|A Chain A, Structure Of Human ( 398) 1557 374.4 1.6e-101 gi|194381088|dbj|BAG64112.1| unnamed protein produ ( 510) 1557 374.5 2e-101 gi|149711769|ref|XP_001497815.1| PREDICTED: simila ( 393) 1554 373.7 2.6e-101 gi|90080692|dbj|BAE89827.1| unnamed protein produc ( 263) 1552 373.1 2.7e-101 gi|90077212|dbj|BAE88286.1| unnamed protein produc ( 393) 1553 373.5 3.1e-101 gi|18181958|dbj|BAB83890.1| Apg4B [Homo sapiens] ( 392) 1551 373.0 4.3e-101 gi|62822370|gb|AAY14919.1| unknown [Homo sapiens] ( 393) 1548 372.3 7e-101 gi|194389756|dbj|BAG60394.1| unnamed protein produ ( 379) 1546 371.8 9.5e-101 gi|194384462|dbj|BAG59391.1| unnamed protein produ ( 319) 1542 370.8 1.6e-100 gi|73994337|ref|XP_851977.1| PREDICTED: similar to ( 394) 1538 369.9 3.6e-100 gi|68533688|gb|AAH98833.1| Autophagy-related 4B (y ( 224) 1497 360.1 1.9e-97 gi|61211780|sp|Q6PZ03.1|ATG4B_BOVIN RecName: Full= ( 393) 1436 345.9 6e-93 gi|149411457|ref|XP_001513122.1| PREDICTED: hypoth ( 528) 1417 341.6 1.7e-91 gi|119591685|gb|EAW71279.1| ATG4 autophagy related ( 331) 1412 340.2 2.6e-91 gi|126338580|ref|XP_001366892.1| PREDICTED: simila ( 396) 1409 339.6 4.9e-91 gi|119591684|gb|EAW71278.1| ATG4 autophagy related ( 415) 1407 339.1 7e-91 gi|169162934|ref|XP_001126088.2| PREDICTED: simila ( 405) 1403 338.2 1.3e-90 gi|30410798|ref|NP_847896.1| APG4 autophagy 4 homo ( 380) 1398 337.0 2.9e-90 gi|34531319|dbj|BAC86110.1| unnamed protein produc ( 468) 1398 337.1 3.3e-90 gi|14042685|dbj|BAB55353.1| unnamed protein produc ( 380) 1394 336.1 5.5e-90 gi|14042153|dbj|BAB55127.1| unnamed protein produc ( 331) 1389 334.8 1.1e-89 gi|114584367|ref|XP_001162556.1| PREDICTED: simila ( 306) 1387 334.3 1.5e-89 gi|61211779|sp|Q6PZ02.1|ATG4B_CHICK RecName: Full= ( 393) 1311 316.6 4.2e-84 gi|224059752|ref|XP_002193231.1| PREDICTED: APG4 a ( 393) 1300 314.0 2.5e-83 gi|149244060|pdb|2Z0D|A Chain A, The Crystal Struc ( 357) 1298 313.5 3.3e-83 gi|115291929|gb|AAI21871.1| Cysteine endopeptidase ( 384) 1192 288.6 1.1e-75 gi|61211762|sp|Q640G7.1|ATG4B_XENLA RecName: Full= ( 384) 1148 278.2 1.4e-72 gi|50369556|gb|AAH76463.1| Atg4b protein [Danio re ( 393) 1110 269.3 7.2e-70 gi|141795460|gb|AAI34887.1| Atg4b protein [Danio r ( 394) 1110 269.3 7.2e-70 gi|61211768|sp|Q6DG88.2|ATG4B_DANRE RecName: Full= ( 394) 1110 269.3 7.2e-70 gi|209147572|gb|ACI32896.1| Cysteine protease ATG4 ( 397) 1099 266.7 4.3e-69 gi|14041938|dbj|BAB55042.1| unnamed protein produc ( 280) 1076 261.2 1.4e-67 gi|119591686|gb|EAW71280.1| ATG4 autophagy related ( 354) 1077 261.5 1.4e-67 gi|45861658|gb|AAS78582.1| Aut2B1 [Bos taurus] ( 342) 972 236.8 3.8e-60 gi|47212536|emb|CAF90552.1| unnamed protein produc ( 366) 925 225.8 8.5e-57 gi|53132082|emb|CAG31871.1| hypothetical protein [ ( 343) 909 222.0 1.1e-55 gi|193784751|dbj|BAG53904.1| unnamed protein produ ( 146) 787 193.0 2.5e-47 gi|151554833|gb|AAI47963.1| ATG4 autophagy related ( 398) 785 192.9 7.4e-47 gi|30109219|gb|AAH41862.1| ATG4 autophagy related ( 321) 784 192.5 7.4e-47 gi|61211859|sp|Q8WYN0.1|ATG4A_HUMAN RecName: Full= ( 398) 784 192.6 8.7e-47 gi|61211744|sp|Q5R699.1|ATG4A_PONAB RecName: Full= ( 398) 784 192.6 8.7e-47 gi|119623100|gb|EAX02695.1| ATG4 autophagy related ( 402) 784 192.6 8.8e-47 >>gi|148707985|gb|EDL39932.1| autophagy-related 4B (yeas (390 aa) initn: 1659 init1: 1659 opt: 1660 Z-score: 2109.8 bits: 398.6 E(): 8.2e-109 Smith-Waterman score: 1660; 97.571% identity (98.381% similar) in 247 aa overlap (20-266:144-390) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|148 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD 240 250 260 270 280 290 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP 300 310 320 330 340 350 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::::::::::::::::::::::::::::::::::: gi|148 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|20071131|gb|AAH27184.1| Autophagy-related 4B (yeast (393 aa) initn: 1659 init1: 1659 opt: 1660 Z-score: 2109.8 bits: 398.6 E(): 8.3e-109 Smith-Waterman score: 1660; 97.571% identity (98.381% similar) in 247 aa overlap (20-266:147-393) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|200 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD 240 250 260 270 280 290 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|200 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP 300 310 320 330 340 350 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::::::::::::::::::::::::::::::::::: gi|200 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|61211813|sp|Q8BGE6.2|ATG4B_MOUSE RecName: Full=Cyst (393 aa) initn: 1652 init1: 1652 opt: 1653 Z-score: 2100.9 bits: 397.0 E(): 2.6e-108 Smith-Waterman score: 1653; 97.166% identity (97.976% similar) in 247 aa overlap (20-266:147-393) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|612 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD 240 250 260 270 280 290 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|612 ESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQP 300 310 320 330 340 350 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::::::::::::::::::::::::::::::::::: gi|612 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|26324650|dbj|BAC26079.1| unnamed protein product [M (393 aa) initn: 1647 init1: 1647 opt: 1648 Z-score: 2094.5 bits: 395.8 E(): 5.9e-108 Smith-Waterman score: 1648; 96.761% identity (97.976% similar) in 247 aa overlap (20-266:147-393) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|263 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|263 EEIRRLCRANLPCVGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD 240 250 260 270 280 290 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: gi|263 ESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQP 300 310 320 330 340 350 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::::::::::::::::::::::::::::::::::: gi|263 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|149037474|gb|EDL91905.1| autophagy-related 4B (yeas (319 aa) initn: 1590 init1: 1590 opt: 1591 Z-score: 2023.3 bits: 382.3 E(): 5.4e-104 Smith-Waterman score: 1591; 93.522% identity (95.951% similar) in 247 aa overlap (20-266:73-319) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|149 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 50 60 70 80 90 100 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN ::: .::::.::::::::: .:::::::.:::::::::: ::::::::::::::::::: gi|149 EEISKLCRASLPCAGAAALSMESERHCNGLPAGAEVTNRPLAWRPLVLLIPLRLGLTDIN 110 120 130 140 150 160 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD 170 180 190 200 210 220 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP ::::::::: :::::::::::::::::: ::::::::::::::::::::::::::::::: gi|149 ESFHCQHPPCRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQP 230 240 250 260 270 280 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::::::::::::::::::::::::::::::::::: gi|149 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 290 300 310 >>gi|221045722|dbj|BAH14538.1| unnamed protein product [ (319 aa) initn: 1556 init1: 1556 opt: 1557 Z-score: 1980.1 bits: 374.3 E(): 1.4e-101 Smith-Waterman score: 1557; 90.688% identity (95.951% similar) in 247 aa overlap (20-266:73-319) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|221 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 50 60 70 80 90 100 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN ::::::::...:::::.:.:.::.::::::::::::::::: :::::::::::::::::: gi|221 EEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDIN 110 120 130 140 150 160 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD ::::::::::::::::::::::::::::::::::::::::::::::::::: ::.::::: gi|221 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPD 170 180 190 200 210 220 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP ::::::::: ::.:.::::::::::::: :.::::::::::::: ::::::::::::::: gi|221 ESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQP 230 240 250 260 270 280 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::: ::::::::::::::::::::::::::::::: gi|221 SHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 290 300 310 >>gi|61212253|sp|Q9Y4P1.1|ATG4B_HUMAN RecName: Full=Cyst (393 aa) initn: 1556 init1: 1556 opt: 1557 Z-score: 1978.8 bits: 374.4 E(): 1.6e-101 Smith-Waterman score: 1557; 90.688% identity (95.951% similar) in 247 aa overlap (20-266:147-393) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|612 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN ::::::::...:::::.:.:.::.::::::::::::::::: :::::::::::::::::: gi|612 EEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDIN 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD ::::::::::::::::::::::::::::::::::::::::::::::::::: ::.::::: gi|612 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPD 240 250 260 270 280 290 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP ::::::::: ::.:.::::::::::::: :.::::::::::::: ::::::::::::::: gi|612 ESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQP 300 310 320 330 340 350 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::: ::::::::::::::::::::::::::::::: gi|612 SHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|78101773|pdb|2CY7|A Chain A, The Crystal Structure (396 aa) initn: 1556 init1: 1556 opt: 1557 Z-score: 1978.8 bits: 374.4 E(): 1.6e-101 Smith-Waterman score: 1557; 90.688% identity (95.951% similar) in 247 aa overlap (20-266:150-396) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|781 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 120 130 140 150 160 170 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN ::::::::...:::::.:.:.::.::::::::::::::::: :::::::::::::::::: gi|781 EEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDIN 180 190 200 210 220 230 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD ::::::::::::::::::::::::::::::::::::::::::::::::::: ::.::::: gi|781 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPD 240 250 260 270 280 290 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP ::::::::: ::.:.::::::::::::: :.::::::::::::: ::::::::::::::: gi|781 ESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQP 300 310 320 330 340 350 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::: ::::::::::::::::::::::::::::::: gi|781 SHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|88192732|pdb|2D1I|A Chain A, Structure Of Human Atg (398 aa) initn: 1556 init1: 1556 opt: 1557 Z-score: 1978.8 bits: 374.4 E(): 1.6e-101 Smith-Waterman score: 1557; 90.688% identity (95.951% similar) in 247 aa overlap (20-266:152-398) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|881 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 130 140 150 160 170 180 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN ::::::::...:::::.:.:.::.::::::::::::::::: :::::::::::::::::: gi|881 EEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDIN 190 200 210 220 230 240 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD ::::::::::::::::::::::::::::::::::::::::::::::::::: ::.::::: gi|881 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPD 250 260 270 280 290 300 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP ::::::::: ::.:.::::::::::::: :.::::::::::::: ::::::::::::::: gi|881 ESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQP 310 320 330 340 350 360 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::: ::::::::::::::::::::::::::::::: gi|881 SHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 370 380 390 >>gi|194381088|dbj|BAG64112.1| unnamed protein product [ (510 aa) initn: 1556 init1: 1556 opt: 1557 Z-score: 1977.3 bits: 374.5 E(): 2e-101 Smith-Waterman score: 1557; 90.688% identity (95.951% similar) in 247 aa overlap (20-266:264-510) 10 20 30 40 mKIAA0 NCLNCHCCGVMLMLYKAHGSVLAFCRKLAVFDTWSSLAVHIAMDNTVVM .: .::::::::::::::::::::::: gi|194 DRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVM 240 250 260 270 280 290 50 60 70 80 90 100 mKIAA0 EEIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDIN ::::::::...:::::.:.:.::.::::::::::::::::: :::::::::::::::::: gi|194 EEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDIN 300 310 320 330 340 350 110 120 130 140 150 160 mKIAA0 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPD ::::::::::::::::::::::::::::::::::::::::::::::::::: ::.::::: gi|194 EAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPD 360 370 380 390 400 410 170 180 190 200 210 220 mKIAA0 ESFHCQHPPSRMGIGELDPSIAVGFFCKKEEDFNDWCQQVKKLSQLGGALPMFELVEQQP ::::::::: ::.:.::::::::::::: :.::::::::::::: ::::::::::::::: gi|194 ESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQP 420 430 440 450 460 470 230 240 250 260 mKIAA0 SHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL ::::: ::::::::::::::::::::::::::::::: gi|194 SHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 480 490 500 510 266 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Tue Mar 17 05:33:58 2009 done: Tue Mar 17 05:39:23 2009 Total Scan time: 759.560 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]