FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1263.ptfa, 446 aa
 vs ./tmplib.26680 library

1768571 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.9594+/-0.00379; mu= 17.9774+/- 0.253
 mean_var=77.2599+/-17.859, 0's: 0 Z-trim: 2  B-trim: 25 in 1/35
 Lambda= 0.1459

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1061  ( 696 res)   mbp15027                   ( 696) 1815  392 7.1e-110


>>mKIAA1061  ( 696 res)   mbp15027                        (696 aa)
 initn: 1805 init1: 913 opt: 1815  Z-score: 2065.0  bits: 391.9 E(): 7.1e-110
Smith-Waterman score: 1815;  57.978% identity (58.636% ungapped) in 445 aa overlap (1-445:256-695)

                                             10        20        30
mKIAA1                               NVRYEDTGAYTCIARNEAGVDEDISSLFVE
                                     .:::::::::::::.::.::::::::::.:
mKIAA1 IIWLKNGMDVSTQMSKQLSLLANGSELHIGSVRYEDTGAYTCIAKNEVGVDEDISSLFIE
         230       240       250       260       270       280     

               40        50        60        70        80        90
mKIAA1 DSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPRECEFQRHIKPSEKLLGYQDEVCP
       :::::::::::::::::..::::::: :::: ::.: .:: ::..::.::..   .:.::
mKIAA1 DSARKTLANILWREEGLSVGNMFYVFAEDGIVVIHPVDCEVQRRLKPTEKIFMSYEEICP
         290       300       310       320       330       340     

              100       110       120       130       140       150
mKIAA1 KAEEDEVQRCVWASAVNVKDKFIYVAQPTLDRILIVDVQSQKVVQAVSTDPVPVKLHYDK
       ..: : .: : :::::::....::::::.:.:.:.::::.:::.:....::.:::: :::
mKIAA1 RVEGDATQPCQWASAVNVRNRYIYVAQPALNRVLVVDVQAQKVLQSIGVDPLPVKLSYDK
         350       360       370       380       390       400     

              160       170       180       190       200       210
mKIAA1 SHDQVWVLSWGSMEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTPTLIIT
       :::::::::::.:.:..:.::::: :: .  .: :.:  .:     ::.::::  .:::.
mKIAA1 SHDQVWVLSWGDMHKSQPSLQVITEASTGQGQHLIRTPFAG-----VDNFFIPPTNLIIN
         410       420       430       440            450       460

              220       230       240       250       260       270
mKIAA1 HMRFGFILHKDESALHKIDLETMSYIKTINLKDSRCIPLSLAYTHLGGYYFISCKADITG
       :.:::::..: . :.::.::::.  .:::.:.   :.: ..:.::::::.:..:. :   
mKIAA1 HIRFGFIFNKTDPAVHKVDLETLMALKTISLRHYGCMPQAMAHTHLGGYFFVQCQQDTPT
              470       480       490       500       510       520

              280       290       300       310       320       330
mKIAA1 ATPPQLVVDSVTDSIIGFNSDVTGTPYVSPDGHYLVSVNDVKGLVRVQYITIRGEILDAF
       .: :::..::::::..: :::.::::.:::::...:::..    ..:: .:.::::   .
mKIAA1 STGPQLLIDSVTDSVLGPNSDITGTPHVSPDGRFIVSVSNKGPWLHVQEVTVRGEIQTLY
              530       540       550       560       570       580

              340       350       360       370       380       390
mKIAA1 DIHTNLHISDLAFQPSFTEAHQYNIYGSSSQQTDVLFVELSSGKVKMIKSLKEPLKTEDW
       :.. :  ::::::: ::::. ::: :.. ... :.::.:::.::.  .:.:::: .    
mKIAA1 DLKINPGISDLAFQHSFTEGSQYNAYATLDKEPDLLFLELSTGKMGRLKNLKEPPRGPAP
              590       600       610       620       630       640

              400       410       420       430       440      
mKIAA1 PWSQKNRHIQGSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVQKGNIVVWVGDA
        :.   : .. ::::::::.::...:::...:: : : ::.. .. .  :::::..
mKIAA1 TWGGPRRVLRDSGLFGQYLLTPAQESLFLVNGRQNALRCEVSGIKGAATVVWVGEV
              650       660       670       680       690      




446 residues in 1 query   sequences
1768571 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:39:36 2006 done: Mon Mar 27 10:39:36 2006
 Scan time:  0.640 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]