FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0272.ptfa, 740 aa vs ./tmplib.26680 library 1768277 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.3728+/-0.00623; mu= 0.5510+/- 0.414 mean_var=233.0553+/-54.720, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0840 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4038 ( 356 res) mie24050 ( 356) 588 84 2.8e-17 >>mKIAA4038 ( 356 res) mie24050 (356 aa) initn: 725 init1: 149 opt: 588 Z-score: 402.6 bits: 84.1 E(): 2.8e-17 Smith-Waterman score: 649; 40.924% identity (45.091% ungapped) in 303 aa overlap (2-296:18-300) 10 20 30 40 mKIAA0 PGHGAERPLRGKM--NKG-WLELESDPGLFTLLVEDFGVKGVQV : :: : : : : : .:::::.:: :.. :: .:.:: mKIAA4 GLRPVAACAAGLRRARGGSGAVCVWSGTMSSNAGEWCLMESDPGVFTELIKGFGCRGAQV 10 20 30 40 50 60 50 60 70 80 90 mKIAA0 EEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQL :::..:. . ::.:.:::::: .. ::..:. ....:::.:. mKIAA4 EEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPA---------GSVVQDSRLETIFFAKQV 70 80 90 100 110 100 110 120 130 140 150 mKIAA0 IPNSCATHALLSVLLNCS--NVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSH : :.:::.:..::::::. .: :: :::..:.:...:. :: :..:. . ..::: mKIAA4 INNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSF 120 130 140 150 160 170 160 170 180 190 200 210 mKIAA0 ARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTD :: . .. : . .. .:::::::::..:::.:::::. ::: : ..:. : mKIAA4 ARQQMFEFDTK----TPAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDD-WIT 180 190 200 210 220 220 230 240 250 260 270 mKIAA0 KARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIKYETRLHVLKVNRQTVLEALQQLIR .: :: .:: . :: :::::::.: ::.. :: .. :. :: . : .. mKIAA4 AVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKMIYEQKIAELQ--RQLAEEPMDTDQG 230 240 250 260 270 280 280 290 300 310 320 330 mKIAA0 VTQPELIQTHKSQESQLPEESKPASSKSPLGLEAGRTPVASECTQTDGAEEVAGSCPQTT : ::.. .....: :: mKIAA4 STVLSAIQSEVARNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLV 290 300 310 320 330 340 740 residues in 1 query sequences 1768277 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:16:15 2006 done: Mon Mar 27 10:16:16 2006 Scan time: 0.910 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]