FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1917.ptfa, 342 aa
 vs ./tmplib.26680 library

1768675 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.3205+/-0.00627; mu= -0.8487+/- 0.416
 mean_var=233.9828+/-55.473, 0's: 0 Z-trim: 2  B-trim: 143 in 1/35
 Lambda= 0.0838

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0544  ( 455 res)   mph00383                   ( 455)  295   48 1.5e-06


>>mKIAA0544  ( 455 res)   mph00383                        (455 aa)
 initn: 294 init1: 171 opt: 295  Z-score: 210.1  bits: 47.7 E(): 1.5e-06
Smith-Waterman score: 295;  33.790% identity (37.000% ungapped) in 219 aa overlap (1-207:240-451)

                                             10        20        30
mKIAA1                               FNPIISSQTSDSEEHSSSENIPPGYEVVSL
                                     :.:... :. : .:::::..:::::: .::
mKIAA0 NNCPICRLPFRALLQIRAVRKKPGALSPISFSPVLA-QSVDHDEHSSSDSIPPGYEPISL
     210       220       230       240        250       260        

               40        50        60        70        80          
mKIAA1 LEALNGPLTSSPAVPPLHVLGDGHLSGMLPSYGSDGYLPPVRTLSPLDRLSDCNNQ-GLK
       ::::::  . :::.:   .  .   ::.     :::       :. :::. . . : :  
mKIAA0 LEALNGLRAVSPAIPSAPLYEEITYSGI-----SDGLSQASCPLAGLDRIMESGLQKGKT
      270       280       290            300       310       320   

      90       100       110       120         130         140     
mKIAA1 LKKSLSKSISQNSSVLHEEEDERSCSESDTQL--SQRLSVQHPEEGPDV--TPESENLTL
        .:: .... . :  .:::..:.   .::. :  :    : .   .:.   : :... .:
mKIAA0 QSKSPDSTLRSPSFPIHEEDEEKLSEDSDAPLPPSGVELVLRESSSPESFGTEEGDEPSL
           330       340       350       360       370       380   

            150       160       170       180       190            
mKIAA1 SSSG---AVDQSSCTGTPLSSTISSPEDPASSSLAQSVMSMASSQISTDTVSS----MSG
       ....   ..:.    :.:     :.:  ::.  :     :: . . :  :.::    .::
mKIAA0 KQGSRVPSIDDVLQDGSPQHHGCSQPVPPADIYLPGWSTSMETPH-SLGTTSSPWPLLSG
           390       400       410       420        430       440  

      200       210       220       230       240       250        
mKIAA1 SYIAPGTEEEGEALPSPRAASRAPSEGEETPAESPDSNFAGLPAGEQDAEGNDIVEEEDR
       :   ::. :                                                   
mKIAA0 SSPEPGVAELTPF                                               
            450                                                    




342 residues in 1 query   sequences
1768675 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:55:52 2006 done: Mon Mar 27 10:55:53 2006
 Scan time:  0.600 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]