FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4217.ptfa, 310 aa
 vs ./tmplib.26680 library

1768707 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.1050+/-0.0055; mu= 8.3219+/- 0.367
 mean_var=143.0735+/-33.474, 0's: 0 Z-trim: 1  B-trim: 2 in 1/35
 Lambda= 0.1072

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0636  ( 560 res)   mkg04101                   ( 560)  918  153 3.3e-38


>>mKIAA0636  ( 560 res)   mkg04101                        (560 aa)
 initn: 707 init1: 562 opt: 918  Z-score: 778.2  bits: 153.0 E(): 3.3e-38
Smith-Waterman score: 918;  54.511% identity (57.312% ungapped) in 266 aa overlap (39-299:301-558)

       10        20        30        40        50        60        
mKIAA4 RLPLFCYLSSAYRSGRAASCVPQVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNG
                                     .  : ::.::: :: ::::::..:::.:::
mKIAA0 PVEYECINEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNG
              280       290       300       310       320       330

       70        80        90       100       110       120        
mKIAA4 NPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPL
       .: .: ::::.::  .. :  :. .:: .:::::.::.:::.::::..::. ..::.::.
mKIAA0 DPSSPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPM
              340       350       360       370       380       390

      130       140       150       160       170          180     
mKIAA4 NNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVAR---AAAKISDGSQYYVL
       : :  .: : ::.:..:.:   :  ..::::: :.:.::.:::   ::.. . .:::.::
mKIAA0 NFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVL
              400       410       420       430       440       450

         190       200       210       220       230         240   
mKIAA4 LIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGD--DVRVSSRGRYA
       ::::::::.:. .:..:::.:..::::::::::: : : ::: ::::  ..:. : :. :
mKIAA0 LIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRAPS-GEVA
              460       470       480       490       500          

           250       260       270       280       290       300   
mKIAA4 ERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPASPNP
        ::::::::::..      :      ::. ::::::.:...:. :  . : :  ::    
mKIAA0 IRDIVQFVPFRQF------QNAPKEALAQCVLAEIPQQVVGYFNTYKLLP-PKNPAVK  
     510       520             530       540       550        560  

           310
mKIAA4 TPAPEQP




310 residues in 1 query   sequences
1768707 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:05:26 2006 done: Mon Mar 27 11:05:27 2006
 Scan time:  0.500 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]