FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA1002.ptfa, 1070 aa
vs ./tmplib.26680 library
1767947 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 13.4155+/-0.0088; mu= -23.0622+/- 0.580
mean_var=534.4371+/-133.025, 0's: 0 Z-trim: 14 B-trim: 0 in 0/36
Lambda= 0.0555
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA0029 ( 453 res) mbg01759 ( 453) 1372 125 2.8e-29
>>mKIAA0029 ( 453 res) mbg01759 (453 aa)
initn: 944 init1: 421 opt: 1372 Z-score: 618.0 bits: 124.8 E(): 2.8e-29
Smith-Waterman score: 1372; 50.698% identity (53.431% ungapped) in 430 aa overlap (652-1070:35-453)
630 640 650 660 670 680
mKIAA1 NSNQQYRPLSHPVAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQGLLS
: : .: ::::. :::..:::.::.:.:..
mKIAA0 FDHIEFNLKYRSILLFTINTKQGLTHFAIAGYQ-VMPNQQQN-YQGIVGVQSPQSQSLMG
10 20 30 40 50 60
690 700 710 720 730 740
mKIAA1 NQRSSMGGQMQGLVVQYTPLPSYQVPVGSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGV
.: .: : ..::.:. : .::::: . . ::.... ..:::.. : .:: ::.::: :.
mKIAA0 GQPNSTGPHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFP-NQSNQGSLPTTGM
70 80 90 100 110 120
750 760 770 780 790
mKIAA1 PVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMS-QQYSGV--SPSGPG
:::::.:::.::.. : .::.:: ::::: :.:.. :::: :.. .: ..: .: : :
mKIAA0 PVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAVPQQPPGGG
130 140 150 160 170 180
800 810 820 830 840 850
mKIAA1 VVVMQLNVPNGPQAPQNPSMVQWSHCKYYSVEQRGQKPGDLYSPDGSPQANAQMGSSPVT
.:.::::.::.::. .. : ::.. :.: .::::: :. . :. : . :. :::.
mKIAA0 MVMMQLNLPNNPQS-RTHSPPQWKQNKHYCDHQRGQKCMDFSNMDNIVQPSPQL-SSPIL
190 200 210 220 230
860 870 880 890 900 910
mKIAA1 SPTQSPAPSPVTSLSNVCTGLSPLPVLTPFPRPGGPAQGDGRYSLLGQPLQYNLSICPP-
::.:::::. ...:... . :: ... : :: :.:::.:: ::::::::: ::
mKIAA0 SPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYN----PPT
240 250 260 270 280 290
920 930 940 950 960 970
mKIAA1 LLHGQSTYTVHQGQSGLKHGNRGKRQALKSASTDLGTADVVLGRVLEVTDLPEGITRTEA
::::. . .::::: .:::::.::: :.::::::....:.:.:::.:.::.::::.::
mKIAA0 LLHGHIPH--QQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRVEA
300 310 320 330 340 350
980 990 1000 1010 1020 1030
mKIAA1 DKLFTQLAMSGAKIQWLKDAQGLPG-------AGGGDNSGTAENGRHPDLAALYTIVAVF
.::: .: ::::.::.: :. : :.:::. . :... :::. ::..:.:
mKIAA0 EKLFGELFKIGAKIRWLRDPQSQPQLRRHALCCGSGDNTVNPEHSKPSDLASTYTVLATF
360 370 380 390 400 410
1040 1050 1060 1070
mKIAA1 PSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ
:: :::.: . .::..::::..::.::..::::::::
mKIAA0 PSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ
420 430 440 450
1070 residues in 1 query sequences
1767947 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:33:42 2006 done: Mon Mar 27 10:33:43 2006
Scan time: 1.070 Display time: 0.040
Function used was FASTA [version 3.4t11 Apr 17, 2002]