FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1002.ptfa, 1070 aa
 vs ./tmplib.26680 library

1767947 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 13.4155+/-0.0088; mu= -23.0622+/- 0.580
 mean_var=534.4371+/-133.025, 0's: 0 Z-trim: 14  B-trim: 0 in 0/36
 Lambda= 0.0555

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0029  ( 453 res)   mbg01759                   ( 453) 1372  125 2.8e-29


>>mKIAA0029  ( 453 res)   mbg01759                        (453 aa)
 initn: 944 init1: 421 opt: 1372  Z-score: 618.0  bits: 124.8 E(): 2.8e-29
Smith-Waterman score: 1372;  50.698% identity (53.431% ungapped) in 430 aa overlap (652-1070:35-453)

             630       640       650       660       670       680 
mKIAA1 NSNQQYRPLSHPVAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQGLLS
                                     : : .: ::::. :::..:::.::.:.:..
mKIAA0 FDHIEFNLKYRSILLFTINTKQGLTHFAIAGYQ-VMPNQQQN-YQGIVGVQSPQSQSLMG
           10        20        30         40         50        60  

             690       700       710       720       730       740 
mKIAA1 NQRSSMGGQMQGLVVQYTPLPSYQVPVGSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGV
       .: .: : ..::.:. :  .::::: . . ::.... ..:::.. : .:: ::.::: :.
mKIAA0 GQPNSTGPHIQGVVIPYPSVPSYQVSLPQGSQGIAHQTYQQPVVFP-NQSNQGSLPTTGM
             70        80        90       100        110       120 

             750       760       770       780        790          
mKIAA1 PVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMS-QQYSGV--SPSGPG
       :::::.:::.::.. : .::.:: ::::: :.:.. ::::  :.. .: ..:  .: : :
mKIAA0 PVYYSVIPPGQQSNLSSAVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCAAVPQQPPGGG
             130       140       150       160       170       180 

      800       810       820       830       840       850        
mKIAA1 VVVMQLNVPNGPQAPQNPSMVQWSHCKYYSVEQRGQKPGDLYSPDGSPQANAQMGSSPVT
       .:.::::.::.::. .. :  ::.. :.:  .:::::  :. . :.  : . :. :::. 
mKIAA0 MVMMQLNLPNNPQS-RTHSPPQWKQNKHYCDHQRGQKCMDFSNMDNIVQPSPQL-SSPIL
             190        200       210       220       230          

      860       870       880       890       900       910        
mKIAA1 SPTQSPAPSPVTSLSNVCTGLSPLPVLTPFPRPGGPAQGDGRYSLLGQPLQYNLSICPP-
       ::.:::::. ...:...  .  :: ... : ::  :.:::.:: :::::::::    :: 
mKIAA0 SPVQSPAPAQLSTLKTIRPSGPPLSIMSQFARPFVPGQGDARYPLLGQPLQYN----PPT
     240       250       260       270       280       290         

       920       930       940       950       960       970       
mKIAA1 LLHGQSTYTVHQGQSGLKHGNRGKRQALKSASTDLGTADVVLGRVLEVTDLPEGITRTEA
       ::::.  .  .::::: .:::::.::: :.::::::....:.:.:::.:.::.::::.::
mKIAA0 LLHGHIPH--QQGQSGSRHGNRGRRQAKKAASTDLGAGEAVVGKVLEITELPDGITRVEA
         300         310       320       330       340       350   

       980       990      1000             1010      1020      1030
mKIAA1 DKLFTQLAMSGAKIQWLKDAQGLPG-------AGGGDNSGTAENGRHPDLAALYTIVAVF
       .::: .:   ::::.::.: :. :         :.:::. . :...  :::. ::..:.:
mKIAA0 EKLFGELFKIGAKIRWLRDPQSQPQLRRHALCCGSGDNTVNPEHSKPSDLASTYTVLATF
           360       370       380       390       400       410   

             1040      1050      1060      1070
mKIAA1 PSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ
       ::  :::.:  .  .::..::::..::.::..::::::::
mKIAA0 PSISAAQSALKKQIHSVNKFKLRMSKKHYDFHILERASSQ
           420       430       440       450   




1070 residues in 1 query   sequences
1767947 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:33:42 2006 done: Mon Mar 27 10:33:43 2006
 Scan time:  1.070 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]