FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1707.ptfa, 1051 aa vs ./tmplib.26680 library 1767966 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.8666+/-0.00531; mu= 9.3986+/- 0.353 mean_var=182.6884+/-43.626, 0's: 0 Z-trim: 4 B-trim: 2 in 1/35 Lambda= 0.0949 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0797 ( 1174 res) mpm03286 (1174) 535 86 2.7e-17 >>mKIAA0797 ( 1174 res) mpm03286 (1174 aa) initn: 1200 init1: 503 opt: 535 Z-score: 403.0 bits: 86.4 E(): 2.7e-17 Smith-Waterman score: 957; 27.674% identity (35.878% ungapped) in 1019 aa overlap (233-1047:156-1145) 210 220 230 240 250 mKIAA1 NLKSEQLSSSSDGSLESCQSVNHHKSFLSESGPKPSRTGDVPAKEAA-----CGGQKQGD : : : : :::: :::.. . mKIAA0 GPGRRGAPLAEVEPEARHPAAATLPTRGPHSPPAPRRCRPWSKKEAAWKEEDGGGQERWQ 130 140 150 160 170 180 260 270 280 290 300 mKIAA1 DGGVTPEMAAPHP---KDFNTG-----NKGCDYLEEGTSNKNTSYSYSEMDHTPVSRK-R : :: : : :. ..: :.. . : ... :: :: ..:: . mKIAA0 RWGSFPERKEYPPYVHKAENSPVMLSHGQGGDHIMKKT-EESESYVESE-----IKRKVQ 190 200 210 220 230 310 320 330 340 350 mKIAA1 KKRGRSNFHDSHNSKTS--------LDKPTEHT----KEEENDSSVSRKLEESGEDSHQD .:: :... : : .: ... :. ::.::... . .: ... mKIAA0 QKRHCSTYQLSPLSPASKKCLTHLEVSEQREYCPKCGKEKENQTKCQSCGIVFHNDLQRN 240 250 260 270 280 290 360 370 380 390 400 410 mKIAA1 PAPPEGLAPESLESEATNLRSFAAGQEPDASAASGR---ASSPNK-SLESSASSEVSENS : . :.... ..::. . .. ... ..: .: .. .. . :... mKIAA0 CRQAVTLNEPTGPLLRTSIHQNSGGQKSQNTGLTAKKFYGNSVDKIPIDILVTCDDSRHN 300 310 320 330 340 350 420 430 440 450 460 mKIAA1 SVAVKGEALTLKEASPPGGSSEESQLLIS--AEPIVVSSDEEGPVEH--KNSVILKLQPP . ..:... : . .: .. .: .::..:::.. . : . :: mKIAA0 YIQTNGKVILPGGKIPKLTNPKERKISVSDLNDPIILSSDDDDDDDDRTKRRESTSPQPA 360 370 380 390 400 410 470 480 490 500 510 520 mKIAA1 HEIMSENQGTSDPQLSELTLGACESVQVTSELFPYNPDVENISCIKSNSEMDLKLDFIFT : .. . :. ::.. : . : .:....: .. : . : : mKIAA0 DSACSSPVPSTGKVEAALNADACRAEQ-EPRSSPAEPELNTIVIPRKARMKDQLGNSIST 420 430 440 450 460 470 530 540 550 560 570 mKIAA1 CVYIGKIKGT-----PKG--CVTFTK-----KYIKIP--FQVSTNEISLTVDTARLKRFG . :... : . : .: . . :.. :.. .. . ..... .. : mKIAA0 PLKRRKVNSHAAFIHPMSLSCQNFESVILNCRSIRVGTLFRLLVEPVIFSLESITIHLDG 480 490 500 510 520 530 580 590 600 610 mKIAA1 --------LWESKDEDHSK----RSHAILFLWLSSDYLQDIQTQL----ENPMLSQQSKA . ...: . . :. ..:: : .. :: :. . .. . mKIAA0 PESDPVDIILNTSDLTKCEWCNVRKLPVVFLQAIPAVYQKLSMQLQMSKEDKVWNDCKGI 540 550 560 570 580 590 620 630 640 650 660 670 mKIAA1 N-------EFIFLELNSSISQREELKLKDIMMEISTKNGNLHLSCPLPWVQALPLFQDLS : ..:.: ........ :. ...:. .:. .:. .: : ::.. . mKIAA0 NRITSLEEQYIILIFQTGLDHQAEVVFESIITDIGIRNN-------VPNFFAKILFDEAN 600 610 620 630 640 650 680 690 700 710 720 730 mKIAA1 PQEISFLHYYYASASALPTAAGADMKKKSVSQPSNSDT-IKPTYTFLHKQSSGCYSLSIT . .. . : : .. . : . : :.:: :. . : :. . . : .: mKIAA0 SRLVACTRSYEESIKG--NCAQKENKVKTVSFESKIQLRSKQELQFFDDDEEAGESHTIF 660 670 680 690 700 740 750 760 770 780 790 mKIAA1 SSPEEEWQEVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLL :::.:::::::::.:::..::::::.:: :::::::::::::::::. mKIAA0 ------------IGPVEKLIVYPPPPAKGGISVTNEDLHCLSEGEFLNDVIIDFYLKYLV 710 720 730 740 750 800 810 820 830 840 850 mKIAA1 LEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKD ::: . : ..: ::::::::: :...: . :. .::. :.:: ::.:::::..::.:: mKIAA0 LEKLKKEDADRIHIFSSFFYKRLNQRERR-NPDTTNLSIQQKRHGRVKTWTRHVDIFEKD 760 770 780 790 800 810 860 870 880 mKIAA1 YIFVPVNESSHWYLAVICFPWLEEAVYEDCP----------------------------- .::::.::..::.:::.::: ::. :: : mKIAA0 FIFVPLNEAAHWFLAVVCFPGLEKPKYEPNPHYHENAVMQKTPSAEDSCVSSASEMGACS 820 830 840 850 860 870 mKIAA1 ------------------------------------------------------------ mKIAA0 QNSAAKPVIKKMLNRKHCLAVTDSSAAQEESEPCYRRNAYSVKCSMKKKNHAINENEEPS 880 890 900 910 920 930 890 900 mKIAA1 ------QTVSQQFQ--------------------------GQQSQHDHKMTDN------- : . .. : :.:: :. .. mKIAA0 NGESTCQDICDRTQSENGLRDECFSSVHHPDALSKIRLNYGDQSADGGKLLEDELIDFSE 940 950 960 970 980 990 910 920 930 940 950 mKIAA1 ---DPHTTSTVSTSAEDSQSTEVNM-SVPKKMCKRPCILILDSLKAASIQNTVQNLREYL :: .: . :... :.:... . .::.::::..:::.. : .:.:. ::::: mKIAA0 DQDDPDDSSDDGLLADENYSSEIGQWHLKPTVCKQPCILLMDSLRGPSRSNVVKILREYL 1000 1010 1020 1030 1040 1050 960 970 980 990 1000 1010 mKIAA1 EVEWEVKRKTHREFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFQDPIVNFELPIHL :::::::. ..: ::: : ::::.:.: ::::::.::::::::..:..:::::..: mKIAA0 EVEWEVKKGSKRSFSKDVMKGSNPKVPQQNNFSDCGVYVLQYVESFFENPVLNFELPMNL 1060 1070 1080 1090 1100 1110 1020 1030 1040 1050 mKIAA1 EKWFPRHVIKTKREDIRELILKLHLQQQKGGSC .::: .:::::.::..::::. .:.: mKIAA0 VNWFPPPRMKTKREEIRNIILKLQESQSKDKKLLKDSLAETSLGDGAEQYASASGGSE 1120 1130 1140 1150 1160 1170 1051 residues in 1 query sequences 1767966 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:51:22 2006 done: Mon Mar 27 10:51:24 2006 Scan time: 1.100 Display time: 0.100 Function used was FASTA [version 3.4t11 Apr 17, 2002]