FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1265.ptfa, 661 aa
 vs ./tmplib.26680 library

1768356 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6549+/-0.00455; mu= 17.7393+/- 0.305
 mean_var=103.4383+/-23.886, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1261

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0062  ( 326 res)   mbh04536                   ( 326)  549  110 2.9e-25


>>mKIAA0062  ( 326 res)   mbh04536                        (326 aa)
 initn: 568 init1: 331 opt: 549  Z-score: 545.9  bits: 110.3 E(): 2.9e-25
Smith-Waterman score: 549;  50.311% identity (51.923% ungapped) in 161 aa overlap (496-655:167-323)

         470       480       490       500       510       520     
mKIAA1 LRKHSHQWHHRHAHHSHGPCHSGSDLKETGIANIAWMVIMGDGIHNFSDGLAIGAAFSAG
                                     :...:::. ..::.::: :::::::.:...
mKIAA0 TFYKRLLLYFIALAIGTLYSNALFQLIPEDIGTLAWMITLSDGLHNFIDGLAIGASFTVS
        140       150       160       170       180       190      

         530       540       550       560       570       580     
mKIAA1 LTGGISTSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVG-Q
       .  :::::.:..:.:.:::::::..::.:::...::. .:.:::   :.:. .:  .: .
mKIAA0 VFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSH
        200       210       220       230       240       250      

          590       600       610       620       630       640    
mKIAA1 YANNITLWIFAITAGMFLYVALVDMLPEMLHGDGDHEEHGFCPVGQFILQNLGLLFGFAI
       .. :   ::::...:::::.::.::.::: .   . :..    :  :..:::::: ::.:
mKIAA0 FSAN---WIFALAGGMFLYIALADMFPEMNEVCQEDEKNDSFLV-PFVIQNLGLLTGFSI
        260          270       280       290        300       310  

          650       660 
mKIAA1 MLVIALYEDKIVYDIQF
       :::...:  .:      
mKIAA0 MLVLTMYSGQIQIG   
            320         




661 residues in 1 query   sequences
1768356 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:39:37 2006 done: Mon Mar 27 10:39:38 2006
 Scan time:  0.820 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]