FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0994.ptfa, 389 aa
 vs ./tmplib.26680 library

1768628 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.3218+/-0.00366; mu= 15.2002+/- 0.245
 mean_var=72.0685+/-15.971, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1511

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4171  ( 668 res)   mtj01044                   ( 668) 1760  393 2.8e-110


>>mKIAA4171  ( 668 res)   mtj01044                        (668 aa)
 initn: 1501 init1: 1501 opt: 1760  Z-score: 2072.2  bits: 393.0 E(): 2.8e-110
Smith-Waterman score: 1760;  62.468% identity (62.791% ungapped) in 389 aa overlap (2-389:281-668)

                                            10        20        30 
mKIAA0                              AEGIPLTPIFTDTVMFRIAPWIMTPNILPPV
                                     : .  :::::::..::.:::::::. :::.
mKIAA4 ERFFVEGLSFPDAGFPGLISFHVTLLDDSNEDFSETPIFTDTAVFRVAPWIMTPSTLPPL
              260       270       280       290       300       310

              40        50        60        70        80        90 
mKIAA0 SVFVCCMKDNYLFLKEVKNLVEKTNCELKVCFQYMNRGDRWIQDEIEFGYIEAPHKGFPV
        :.:: ...:  :.. :..:..:..:.: .: :  ::.:::::::.:.::..:::: .::
mKIAA4 EVYVCRVRNNTCFVEAVEELARKAGCKLTICPQAENRNDRWIQDEMELGYVQAPHKTLPV
              320       330       340       350       360       370

             100       110       120       130       140       150 
mKIAA0 VLDSPRDGNLKDFPIKQLLGPDFGYVTREPLFETVTSLDSFGNLEVSPPVTVNGKEYPLG
       :.::::.:.:. :: :..:: :::::::::   .:..:::::::::::::..::::::::
mKIAA4 VFDSPRNGELQGFPYKRILGLDFGYVTREPKDSSVSGLDSFGNLEVSPPVVANGKEYPLG
              380       390       400       410       420       430

             160       170       180       190       200       210 
mKIAA0 RILIGSSFPLSGGRRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFIPIPGKKEF
       :::::...: : :::.:.:::.::.::.::  :::. :::.:::::::..:.: :  : :
mKIAA4 RILIGGNLPGSRGRRVTQVVRNFLHAQKVQPLVELFVDWLAVGHVDEFLSFVPAPDGKGF
              440       450       460       470       480       490

             220       230       240        250       260       270
mKIAA0 RLLMASTSACYQLFREKQKAGHGEAVMFKG-LGGMSSKRITINKILSNESLTQENQYFQR
       :::.:: .::..::.:::: :::....:.: .:    . ..::.::.:.:: . :.. : 
mKIAA4 RLLLASPGACFRLFQEKQKWGHGRSLLFEGVIGDRRVQTVSINQILNNQSLINFNKFAQS
              500       510       520       530       540       550

              280       290       300       310       320       330
mKIAA0 CLDWNRDILKRELALTEKDIIDLPALFKMDENHQARAFFPNMVNMIVLDKDLGIPKPFGP
       :.::::..:::::.:.: ::::.: :::  :...: ::::..:::.:: : :::::::::
mKIAA4 CIDWNREVLKRELGLAEGDIIDIPQLFKT-EKRKAVAFFPDLVNMLVLGKHLGIPKPFGP
              560       570        580       590       600         

              340       350       360       370       380         
mKIAA0 QVEEECCLETHVRGLLEPLGLACTFIDDISAYHKFLGEVHCGTNVRRKPFAFKWWHMVP
        .. .:::: .::.::::::: ::::::.. :: . :::::::::::.:::::::::::
mKIAA4 IINGRCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVRREPFAFKWWHMVP
     610       620       630       640       650       660        




389 residues in 1 query   sequences
1768628 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:33:35 2006 done: Mon Mar 27 10:33:36 2006
 Scan time:  0.560 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]