# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbh02389.fasta.nr -Q ../query/mKIAA1102.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1102, 785 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7914294 sequences Expectation_n fit: rho(ln(x))= 6.2989+/-0.000201; mu= 8.7476+/- 0.011 mean_var=125.3256+/-24.031, 0's: 28 Z-trim: 43 B-trim: 427 in 1/66 Lambda= 0.114566 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148705828|gb|EDL37775.1| RIKEN cDNA 3732412D22 ( 854) 5227 875.6 0 gi|74137268|dbj|BAE22010.1| unnamed protein produc ( 901) 5227 875.7 0 gi|152032557|sp|Q3UH68.2|LIMC1_MOUSE RecName: Full (1057) 5227 875.7 0 gi|27502973|gb|AAH42189.1| Limch1 protein [Mus mus ( 773) 4867 816.1 0 gi|149035328|gb|EDL90032.1| rCG56941 [Rattus norve ( 809) 4772 800.4 0 gi|49522709|gb|AAH75634.1| LIM and calponin homolo ( 901) 4387 736.8 8.7e-210 gi|114593782|ref|XP_001149024.1| PREDICTED: simila ( 897) 4291 721.0 5.2e-205 gi|114593802|ref|XP_001148737.1| PREDICTED: hypoth ( 902) 4291 721.0 5.2e-205 gi|194209209|ref|XP_001494673.2| PREDICTED: LIM an ( 903) 4285 720.0 1e-204 gi|33872553|gb|AAH23546.1| LIMCH1 protein [Homo sa ( 897) 4284 719.8 1.2e-204 gi|163310747|ref|NP_001106190.1| LIM and calponin ( 902) 4280 719.1 1.8e-204 gi|119613393|gb|EAW92987.1| hypothetical protein, ( 904) 4280 719.1 1.8e-204 gi|163310745|ref|NP_001106189.1| LIM and calponin (1056) 4280 719.2 2.1e-204 gi|51476146|emb|CAH18063.1| hypothetical protein [ ( 902) 4277 718.7 2.6e-204 gi|163310743|ref|NP_001106188.1| LIM and calponin (1057) 4268 717.2 8.1e-204 gi|57999475|emb|CAI45946.1| hypothetical protein [ (1057) 4258 715.6 2.6e-203 gi|109499675|ref|XP_223397.4| PREDICTED: similar t (1228) 4229 710.8 7.9e-202 gi|114593794|ref|XP_001148952.1| PREDICTED: hypoth ( 885) 3942 663.3 1.2e-187 gi|114593806|ref|XP_001148461.1| PREDICTED: hypoth ( 890) 3942 663.3 1.2e-187 gi|221042634|dbj|BAH12994.1| unnamed protein produ ( 890) 3940 662.9 1.5e-187 gi|31873943|emb|CAD97899.1| hypothetical protein [ ( 890) 3935 662.1 2.7e-187 gi|163310749|ref|NP_001106191.1| LIM and calponin ( 890) 3931 661.5 4.2e-187 gi|114593812|ref|XP_001148877.1| PREDICTED: hypoth ( 729) 3927 660.7 5.8e-187 gi|119613391|gb|EAW92985.1| hypothetical protein, ( 923) 3753 632.1 3.1e-178 gi|119613394|gb|EAW92988.1| hypothetical protein, (1082) 3753 632.1 3.5e-178 gi|152032556|sp|Q9UPQ0.3|LIMC1_HUMAN RecName: Full (1083) 3745 630.8 8.7e-178 gi|119613390|gb|EAW92984.1| hypothetical protein, (1083) 3741 630.1 1.4e-177 gi|221041038|dbj|BAH12196.1| unnamed protein produ ( 833) 3736 629.2 2e-177 gi|114593778|ref|XP_001148596.1| PREDICTED: hypoth (1467) 3507 591.6 7.5e-166 gi|114593798|ref|XP_517164.2| PREDICTED: hypotheti (1472) 3507 591.6 7.5e-166 gi|119613392|gb|EAW92986.1| hypothetical protein, (1467) 3496 589.8 2.7e-165 gi|117646728|emb|CAL37479.1| hypothetical protein (1467) 3489 588.6 5.9e-165 gi|21732494|emb|CAD38604.1| hypothetical protein [ (1467) 3489 588.6 5.9e-165 gi|117644986|emb|CAL37959.1| hypothetical protein (1467) 3475 586.3 2.9e-164 gi|221040406|dbj|BAH11880.1| unnamed protein produ ( 916) 3409 575.2 4e-161 gi|221041020|dbj|BAH12187.1| unnamed protein produ ( 821) 3404 574.3 6.6e-161 gi|221042930|dbj|BAH13142.1| unnamed protein produ ( 755) 3389 571.8 3.5e-160 gi|221042450|dbj|BAH12902.1| unnamed protein produ ( 710) 3305 557.9 5e-156 gi|114593810|ref|XP_001148667.1| PREDICTED: hypoth ( 875) 2728 462.6 3e-127 gi|114593796|ref|XP_001148254.1| PREDICTED: simila ( 821) 2384 405.7 3.7e-110 gi|114593790|ref|XP_001148399.1| PREDICTED: hypoth ( 910) 2283 389.1 4.2e-105 gi|60219472|emb|CAI56749.1| hypothetical protein [ (1069) 2284 389.3 4.2e-105 gi|60219485|emb|CAI56754.1| hypothetical protein [ ( 910) 2275 387.8 1.1e-104 gi|221044198|dbj|BAH13776.1| unnamed protein produ ( 409) 2202 375.4 2.6e-101 gi|20988588|gb|AAH29735.1| LIMCH1 protein [Homo sa ( 326) 1783 306.0 1.5e-80 gi|73974938|ref|XP_532365.2| PREDICTED: similar to ( 278) 1353 234.9 3.4e-59 gi|123900563|sp|Q3KQW7.1|LIMC1_XENLA RecName: Full (1083) 1320 230.0 3.9e-57 gi|166796252|gb|AAI59251.1| Zgc:175186 protein [Da (1020) 769 138.9 9.8e-30 gi|14388501|dbj|BAB60780.1| hypothetical protein [ ( 175) 707 127.9 3.4e-27 gi|47227514|emb|CAG04662.1| unnamed protein produc (1018) 662 121.2 2.1e-24 >>gi|148705828|gb|EDL37775.1| RIKEN cDNA 3732412D22 [Mus (854 aa) initn: 5227 init1: 5227 opt: 5227 Z-score: 4673.3 bits: 875.6 E(): 0 Smith-Waterman score: 5227; 100.000% identity (100.000% similar) in 785 aa overlap (1-785:70-854) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::::::::::: gi|148 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEFRKSWSTAT 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS 280 290 300 310 320 330 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD 340 350 360 370 380 390 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ 400 410 420 430 440 450 400 410 420 430 440 450 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEP 460 470 480 490 500 510 460 470 480 490 500 510 mKIAA1 EATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQ 520 530 540 550 560 570 520 530 540 550 560 570 mKIAA1 EQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQL 580 590 600 610 620 630 580 590 600 610 620 630 mKIAA1 STSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 STSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSP 640 650 660 670 680 690 640 650 660 670 680 690 mKIAA1 SANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLA 700 710 720 730 740 750 700 710 720 730 740 750 mKIAA1 LEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQ 760 770 780 790 800 810 760 770 780 mKIAA1 LGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL ::::::::::::::::::::::::::::::::::: gi|148 LGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL 820 830 840 850 >>gi|74137268|dbj|BAE22010.1| unnamed protein product [M (901 aa) initn: 5227 init1: 5227 opt: 5227 Z-score: 4673.0 bits: 875.7 E(): 0 Smith-Waterman score: 5227; 100.000% identity (100.000% similar) in 785 aa overlap (1-785:117-901) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::::::::::: gi|741 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEFRKSWSTAT 90 100 110 120 130 140 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD 150 160 170 180 190 200 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR 210 220 230 240 250 260 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND 270 280 290 300 310 320 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS 330 340 350 360 370 380 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD 390 400 410 420 430 440 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ 450 460 470 480 490 500 400 410 420 430 440 450 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEP 510 520 530 540 550 560 460 470 480 490 500 510 mKIAA1 EATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQ 570 580 590 600 610 620 520 530 540 550 560 570 mKIAA1 EQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 EQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQL 630 640 650 660 670 680 580 590 600 610 620 630 mKIAA1 STSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 STSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSP 690 700 710 720 730 740 640 650 660 670 680 690 mKIAA1 SANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLA 750 760 770 780 790 800 700 710 720 730 740 750 mKIAA1 LEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQ 810 820 830 840 850 860 760 770 780 mKIAA1 LGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL ::::::::::::::::::::::::::::::::::: gi|741 LGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL 870 880 890 900 >>gi|152032557|sp|Q3UH68.2|LIMC1_MOUSE RecName: Full=LIM (1057 aa) initn: 5227 init1: 5227 opt: 5227 Z-score: 4672.1 bits: 875.7 E(): 0 Smith-Waterman score: 5227; 100.000% identity (100.000% similar) in 785 aa overlap (1-785:273-1057) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::::::::::: gi|152 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEFRKSWSTAT 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD 310 320 330 340 350 360 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR 370 380 390 400 410 420 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND 430 440 450 460 470 480 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS 490 500 510 520 530 540 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD 550 560 570 580 590 600 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ 610 620 630 640 650 660 400 410 420 430 440 450 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEP 670 680 690 700 710 720 460 470 480 490 500 510 mKIAA1 EATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 EATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQ 730 740 750 760 770 780 520 530 540 550 560 570 mKIAA1 EQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 EQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQL 790 800 810 820 830 840 580 590 600 610 620 630 mKIAA1 STSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 STSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSP 850 860 870 880 890 900 640 650 660 670 680 690 mKIAA1 SANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 SANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLA 910 920 930 940 950 960 700 710 720 730 740 750 mKIAA1 LEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 LEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQ 970 980 990 1000 1010 1020 760 770 780 mKIAA1 LGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL ::::::::::::::::::::::::::::::::::: gi|152 LGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL 1030 1040 1050 >>gi|27502973|gb|AAH42189.1| Limch1 protein [Mus musculu (773 aa) initn: 4867 init1: 4867 opt: 4867 Z-score: 4352.3 bits: 816.1 E(): 0 Smith-Waterman score: 5101; 98.344% identity (98.471% similar) in 785 aa overlap (1-785:1-773) 10 20 30 40 50 60 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTATSPLGGERPFRYGPRTPVSDDAESTSMFDMR :::::::::::::::::::::::::::::::::::::::: :::::::: gi|275 KSNQTAYVPAPLRKKKAEREEFRKSWSTATSPLGGERPFR------------STSMFDMR 10 20 30 40 70 80 90 100 110 120 mKIAA1 CEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSASQDLIKKEEERKKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 CEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSASQDLIKKEEERKKM 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 EKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIERFTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 EKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIERFTI 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 SEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPKFTATVETTIARTSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 SEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPKFTATVETTIARTSV 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 PESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKVSMNGEMAPGDEE :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|275 PESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTLKVDGKVSMNGEMAPGDEE 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 GKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSAPQELTAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 GKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSAPQELTAAS 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA1 EETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSSNPQLKNEVPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 EETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSSNPQLKNEVPE 350 360 370 380 390 400 430 440 450 460 470 480 mKIAA1 QGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQLHLPNPSSQADSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 QGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQLHLPNPSSQADSP 410 420 430 440 450 460 490 500 510 520 530 540 mKIAA1 SSEKSPGSTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 SSEKSPGSTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEE 470 480 490 500 510 520 550 560 570 580 590 600 mKIAA1 EERRYYEEERKIIEDTVVPFTISSSSADQLSTSLSVTEGSGTRNKMDLENCPDKENERRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 EERRYYEEERKIIEDTVVPFTISSSSADQLSTSLSVTEGSGTRNKMDLENCPDKENERRQ 530 540 550 560 570 580 610 620 630 640 650 660 mKIAA1 KTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEISVSKGIHQDPQLEAEAGAPHCGTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 KTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEISVSKGIHQDPQLEAEAGAPHCGTN 590 600 610 620 630 640 670 680 690 700 710 720 mKIAA1 PQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTINHQMESPGERRKSISGKKLCSSCGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 PQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTINHQMESPGERRKSISGKKLCSSCGL 650 660 670 680 690 700 730 740 750 760 770 780 mKIAA1 TLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 TLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAG 710 720 730 740 750 760 mKIAA1 QPTTL ::::: gi|275 QPTTL 770 >>gi|149035328|gb|EDL90032.1| rCG56941 [Rattus norvegicu (809 aa) initn: 2814 init1: 2579 opt: 4772 Z-score: 4267.2 bits: 800.4 E(): 0 Smith-Waterman score: 4772; 92.366% identity (96.056% similar) in 786 aa overlap (1-785:24-809) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTATSPLGGER :::::::::::::::::::::.::::::::::::::: gi|149 MSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTATSPLGGER 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 PFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLA 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 RWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEA 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 YKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 YKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYL 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA1 RQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQE :::::::::::::::::::::::::: ..:::::::: ::::::::::::::::::::: gi|149 RQQSLPPPKFTATVETTIARTSVPESSVAAGTGSPSKTSTPNTVPMLTPRPYSQPKNSQE 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA1 VLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQ :::::::::::::::: : :: :::::: :.:.::::::::::::::::::: ::::::: gi|149 VLKTFKVDGKVSMNGETARGDVEGKEKEDPTAVAPGPSLTKSQMFEGVATVHGSPVQVKQ 310 320 330 340 350 360 340 350 360 370 380 390 mKIAA1 GSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVT :::::::::::::: :::::::::::::::..::.::: :. :.: ::::::::::::: gi|149 GSNSIEINIKKPNSPPQELTAASEETESNGRDDENGEESSGARDVELDSAEPQHFTTTVT 370 380 390 400 410 420 400 410 420 430 440 450 mKIAA1 RCSPTVALVEFSSNPQLKNEVPE-QGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTF :::::::::::::.:::.::::: : :::::.:::::::::::::::::::::::::::: gi|149 RCSPTVALVEFSSSPQLRNEVPEEQDQKKPENEMSGKVELVLSQKVAKPKSPEPEATLTF 430 440 450 460 470 480 460 470 480 490 500 510 mKIAA1 PFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQEQERLL :::::::::.:::::: .::::::::::::.::::::::::::::::::::::::::::: gi|149 PFLDKMPETDQLHLPNLNSQADSPSSEKSPASTPFKFWAWDPEEERRRQEKWQQEQERLL 490 500 510 520 530 540 520 530 540 550 560 570 mKIAA1 QERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQLSTSLSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: gi|149 QERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQLSTSSSV 550 560 570 580 590 600 580 590 600 610 620 630 mKIAA1 TEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEI ::::::::::::::: :...::::.::.::::.:: ::.::.:::::.::: ::::: : gi|149 TEGSGTRNKMDLENCQDRDKERRQNTPLQENDSDSSLKARESGLPEEHSLTQSPSANSEN 610 620 630 640 650 660 640 650 660 670 680 690 mKIAA1 SVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTIN :::::: :: : :.:: : ::::::: ::::: :::: ::::: :::::::::::::.:: gi|149 SVSKGISQDQQPETEAEASHCGTNPQSAQDPPWNQQISNPPTSKSEDVKPKTLALEKSIN 670 680 690 700 710 720 700 710 720 730 740 750 mKIAA1 HQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVS ::.:::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|149 HQIESPGERRKSISGKKLCSSCGLALGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVS 730 740 750 760 770 780 760 770 780 mKIAA1 GTDVRIRNGLLNCTDCYMRSRSAGQPTTL ::::::::::::::::::::::::::::: gi|149 GTDVRIRNGLLNCTDCYMRSRSAGQPTTL 790 800 >>gi|49522709|gb|AAH75634.1| LIM and calponin homology d (901 aa) initn: 4575 init1: 4377 opt: 4387 Z-score: 3922.7 bits: 736.8 E(): 8.7e-210 Smith-Waterman score: 4387; 95.157% identity (96.439% similar) in 702 aa overlap (84-785:203-901) 60 70 80 90 100 110 mKIAA1 TSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSASQDLIKK :.:.: : : . .: : :. : . gi|495 TIYWLGKAANSCASYGGTTLNLKEFEGLLAQMRKETD---DIDSPKRSIRDSGYIDCWDS 180 190 200 210 220 120 130 140 150 160 170 mKIAA1 EEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQ :. . . ::::::::::::::::::::::::::::::::::::::::::::::: gi|495 ERSDSLSPPRHGREDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQ 230 240 250 260 270 280 180 190 200 210 220 230 mKIAA1 YIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPKFTATVET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 YIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPKFTATVET 290 300 310 320 330 340 240 250 260 270 280 290 mKIAA1 TIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKVSMNGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 TIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKVSMNGE 350 360 370 380 390 400 300 310 320 330 340 350 mKIAA1 MAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 MAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSAP 410 420 430 440 450 460 360 370 380 390 400 410 mKIAA1 QELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSSNPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|495 QELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSPNPQ 470 480 490 500 510 520 420 430 440 450 460 470 mKIAA1 LKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQLHLPNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 LKNEVPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQLHLPNP 530 540 550 560 570 580 480 490 500 510 520 530 mKIAA1 SSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 SSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEK 590 600 610 620 630 640 540 550 560 570 580 590 mKIAA1 AQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQLSTSLSVTEGSGTRNKMDLENCPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 AQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQLSTSLSVTEGSGTRNKMDLENCPD 650 660 670 680 690 700 600 610 620 630 640 650 mKIAA1 KENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEISVSKGIHQDPQLEAEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 KENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEISVSKGIHQDPQLEAEAG 710 720 730 740 750 760 660 670 680 690 700 710 mKIAA1 APHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTINHQMESPGERRKSISGKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 APHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTINHQMESPGERRKSISGKK 770 780 790 800 810 820 720 730 740 750 760 770 mKIAA1 LCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|495 LCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 830 840 850 860 870 880 780 mKIAA1 MRSRSAGQPTTL :::::::::::: gi|495 MRSRSAGQPTTL 890 900 >>gi|114593782|ref|XP_001149024.1| PREDICTED: similar to (897 aa) initn: 2648 init1: 2012 opt: 4291 Z-score: 3836.9 bits: 721.0 E(): 5.2e-205 Smith-Waterman score: 4291; 83.227% identity (92.376% similar) in 787 aa overlap (1-785:114-897) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::.:::::::: gi|114 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTAT 90 100 110 120 130 140 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|114 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDD 150 160 170 180 190 200 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::.:::::::::::::::::..::::::::::::::::::::::::: gi|114 KWQDDLARWKSRRRSVSQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERR 210 220 230 240 250 260 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::.::: :: gi|114 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFLND 270 280 290 300 310 320 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :.:::::::::::::::::::::::::.:: .. :::.::::: .::..::::::.::: gi|114 PNPMKYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYS 330 340 350 360 370 380 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD ::::::.::::::::::::.::: . .:: ::.: :..: :. :::::::::::: :: gi|114 QPKNSQDVLKTFKVDGKVSVNGETVHREEE-KERECPTVA-PAHSLTKSQMFEGVARVHG 390 400 410 420 430 440 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ ::...:: ..:::::::::::.::::.:..:.:: :.: :.. .: :..: :.::: gi|114 SPLELKQDNGSIEINIKKPNSVPQELAATTEKTEPNSQGDKNDGGKPRKGNIELASSEPQ 450 460 470 480 490 500 400 410 420 430 440 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQ-GQKKPEDEMSGKVELVLSQKVAKPKSPE ::::::::::::::.::: :.:::::.: :. :::::.::::::::::::::.:::::: gi|114 HFTTTVTRCSPTVAFVEFPSSPQLKNDVSEEKDQKKPENEMSGKVELVLSQKVVKPKSPE 510 520 530 540 550 560 450 460 470 480 490 500 mKIAA1 PEATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQ :::::::::::::::.::::::: .::.::::::::: .::::::::::::::::::::: gi|114 PEATLTFPFLDKMPEANQLHLPNLNSQVDSPSSEKSPVTTPFKFWAWDPEEERRRQEKWQ 570 580 590 600 610 620 510 520 530 540 550 560 mKIAA1 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQ ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|114 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTVSSSSADQ 630 640 650 660 670 680 570 580 590 600 610 620 mKIAA1 LSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGG-LPEEQSLTP :::: :.:::::: ::.:: :: :....:: : :: .:.: ::::::. : :. ::: gi|114 LSTSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSFQGDDSDLLLKTRESDRLEEKGSLTE 690 700 710 720 730 740 630 640 650 660 670 680 mKIAA1 SPSANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKT . :. ::::.:.: ::.::::::::::::: :::: .::: :: : .:::::::: gi|114 GALAHSGNPVSKGVHEDHQLDAEAGAPHCGTNPQLAQDPSQNQQTSNP-THSSEDVKPKT 750 760 770 780 790 800 690 700 710 720 730 740 mKIAA1 LALEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICK : :.:.::::.:::.::::::::::::::::: ::::::::::::::::::::::::::: gi|114 LPLDKSINHQIESPSERRKSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICK 810 820 830 840 850 860 750 760 770 780 mKIAA1 GQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL :::::::::::::::::::::.::::::::::::::: gi|114 GQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL 870 880 890 >>gi|114593802|ref|XP_001148737.1| PREDICTED: hypothetic (902 aa) initn: 2648 init1: 2012 opt: 4291 Z-score: 3836.9 bits: 721.0 E(): 5.2e-205 Smith-Waterman score: 4291; 83.227% identity (92.376% similar) in 787 aa overlap (1-785:119-902) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::.:::::::: gi|114 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTAT 90 100 110 120 130 140 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|114 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDD 150 160 170 180 190 200 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::.:::::::::::::::::..::::::::::::::::::::::::: gi|114 KWQDDLARWKSRRRSVSQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERR 210 220 230 240 250 260 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::.::: :: gi|114 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFLND 270 280 290 300 310 320 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :.:::::::::::::::::::::::::.:: .. :::.::::: .::..::::::.::: gi|114 PNPMKYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYS 330 340 350 360 370 380 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD ::::::.::::::::::::.::: . .:: ::.: :..: :. :::::::::::: :: gi|114 QPKNSQDVLKTFKVDGKVSVNGETVHREEE-KERECPTVA-PAHSLTKSQMFEGVARVHG 390 400 410 420 430 440 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ ::...:: ..:::::::::::.::::.:..:.:: :.: :.. .: :..: :.::: gi|114 SPLELKQDNGSIEINIKKPNSVPQELAATTEKTEPNSQGDKNDGGKPRKGNIELASSEPQ 450 460 470 480 490 500 400 410 420 430 440 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQ-GQKKPEDEMSGKVELVLSQKVAKPKSPE ::::::::::::::.::: :.:::::.: :. :::::.::::::::::::::.:::::: gi|114 HFTTTVTRCSPTVAFVEFPSSPQLKNDVSEEKDQKKPENEMSGKVELVLSQKVVKPKSPE 510 520 530 540 550 560 450 460 470 480 490 500 mKIAA1 PEATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQ :::::::::::::::.::::::: .::.::::::::: .::::::::::::::::::::: gi|114 PEATLTFPFLDKMPEANQLHLPNLNSQVDSPSSEKSPVTTPFKFWAWDPEEERRRQEKWQ 570 580 590 600 610 620 510 520 530 540 550 560 mKIAA1 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQ ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|114 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTVSSSSADQ 630 640 650 660 670 680 570 580 590 600 610 620 mKIAA1 LSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGG-LPEEQSLTP :::: :.:::::: ::.:: :: :....:: : :: .:.: ::::::. : :. ::: gi|114 LSTSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSFQGDDSDLLLKTRESDRLEEKGSLTE 690 700 710 720 730 740 630 640 650 660 670 680 mKIAA1 SPSANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKT . :. ::::.:.: ::.::::::::::::: :::: .::: :: : .:::::::: gi|114 GALAHSGNPVSKGVHEDHQLDAEAGAPHCGTNPQLAQDPSQNQQTSNP-THSSEDVKPKT 750 760 770 780 790 800 690 700 710 720 730 740 mKIAA1 LALEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICK : :.:.::::.:::.::::::::::::::::: ::::::::::::::::::::::::::: gi|114 LPLDKSINHQIESPSERRKSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICK 810 820 830 840 850 860 750 760 770 780 mKIAA1 GQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL :::::::::::::::::::::.::::::::::::::: gi|114 GQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL 870 880 890 900 >>gi|194209209|ref|XP_001494673.2| PREDICTED: LIM and ca (903 aa) initn: 3701 init1: 3701 opt: 4285 Z-score: 3831.5 bits: 720.0 E(): 1e-204 Smith-Waterman score: 4285; 83.609% identity (91.487% similar) in 787 aa overlap (1-785:119-903) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::.:::::::: gi|194 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTAT 90 100 110 120 130 140 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD :::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::: gi|194 SPLGGERPFRYGLRTPVSDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDD 150 160 170 180 190 200 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::::::::::::::::::::..::::: ::::::::::::::::::: gi|194 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLLAGEDGTRERRKSIKTYREIVQEKERR 210 220 230 240 250 260 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::.::: .: gi|194 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFVDD 270 280 290 300 310 320 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :.:::::::::::::::::::::::.: :: .. :::.::::: .::..::::::.::: gi|194 PNPMKYLRQQSLPPPKFTATVETTITRPSVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYS 330 340 350 360 370 380 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD ::::::::::::::::: .:::::. :::: ::.: :.. .::::::::::::: :: gi|194 QPKNSQEVLKTFKVDGKFNMNGEMVHGDEEEKERECPTVEL-APSLTKSQMFEGVAKVHG 390 400 410 420 430 440 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ :::..:: :::::::::::::.:::: :..:::: :.::::. :. :. : :.::: gi|194 SPVELKQDSNSIEINIKKPNSVPQELMATTEETELNSQEDENDGEKTEKGNTELASSEPQ 450 460 470 480 490 500 400 410 420 430 440 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQ-GQKKPEDEMSGKVELVLSQKVAKPKSPE :::::::: :::::.::: :.:: ::.:::. ::: :.::::::::::::::.:::::: gi|194 HFTTTVTRSSPTVAFVEFPSSPQPKNDVPEEKDQKKLENEMSGKVELVLSQKVVKPKSPE 510 520 530 540 550 560 450 460 470 480 490 500 mKIAA1 PEATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQ ::::::::::::::::::::::: .::.:::.::::: .::::::::::::::::::::: gi|194 PEATLTFPFLDKMPETNQLHLPNLNSQVDSPGSEKSPVTTPFKFWAWDPEEERRRQEKWQ 570 580 590 600 610 620 510 520 530 540 550 560 mKIAA1 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|194 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSNSADQ 630 640 650 660 670 680 570 580 590 600 610 620 mKIAA1 LSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQ-SLTP :::: :.::.::: :::::::: ..: : ::: ::::...: ::::::: ::. ::: gi|194 LSTSSSMTEASGTVNKMDLENCREEE-ETRQKKPFQEDNNDLLLKTREGDPVEEKGSLTQ 690 700 710 720 730 740 630 640 650 660 670 680 mKIAA1 SPSANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKT . .. : :::::: : .:::::: ::.::: :::: .:::. ::: . ::::::: gi|194 GALTHSENPGSKGIHQGDQWDAEAGAPPCGVNPQLAQDPSQNQQVSNPPMHVLEDVKPKT 750 760 770 780 790 800 690 700 710 720 730 740 mKIAA1 LALEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICK : :.:.::::.:::.::::::::::::::::: ::::::::::::::::::::::::::: gi|194 LPLDKSINHQIESPSERRKSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICK 810 820 830 840 850 860 750 760 770 780 mKIAA1 GQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL :::::::::::::::::::::.::::::::::::::: gi|194 GQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL 870 880 890 900 >>gi|33872553|gb|AAH23546.1| LIMCH1 protein [Homo sapien (897 aa) initn: 2630 init1: 1996 opt: 4284 Z-score: 3830.7 bits: 719.8 E(): 1.2e-204 Smith-Waterman score: 4284; 83.100% identity (92.376% similar) in 787 aa overlap (1-785:114-897) 10 20 30 mKIAA1 KSNQTAYVPAPLRKKKAEREEFRKSWSTAT :::::::::::::::::::::.:::::::: gi|338 PDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTAT 90 100 110 120 130 140 40 50 60 70 80 90 mKIAA1 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDD ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|338 SPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDD 150 160 170 180 190 200 100 110 120 130 140 150 mKIAA1 KWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERR :::::::::::::::.:::::::::::::::::..::::::::::::::::::::::::: gi|338 KWQDDLARWKSRRRSVSQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERR 210 220 230 240 250 260 160 170 180 190 200 210 mKIAA1 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPND :::::::::::::::::::::::::::::::::::::::::::::::::::::.::: :: gi|338 ERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNLSSFLND 270 280 290 300 310 320 220 230 240 250 260 270 mKIAA1 PSPMKYLRQQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYS :.:::::::::::::::::::::::::.:: .. :::.::::: .::..::::::.::: gi|338 PNPMKYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYS 330 340 350 360 370 380 280 290 300 310 320 330 mKIAA1 QPKNSQEVLKTFKVDGKVSMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHD ::::::.::::::::::::.::: . .:: ::.: :..: :. :::::::::::: :: gi|338 QPKNSQDVLKTFKVDGKVSVNGETVHREEE-KERECPTVA-PAHSLTKSQMFEGVARVHG 390 400 410 420 430 440 340 350 360 370 380 390 mKIAA1 SPVQVKQGSNSIEINIKKPNSAPQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQ ::...:: ..:::::::::::.::::.:..:.:: :.:::.. . :..: :.::: gi|338 SPLELKQDNGSIEINIKKPNSVPQELAATTEKTEPNSQEDKNDGGKSRKGNIELASSEPQ 450 460 470 480 490 500 400 410 420 430 440 mKIAA1 HFTTTVTRCSPTVALVEFSSNPQLKNEVPEQ-GQKKPEDEMSGKVELVLSQKVAKPKSPE ::::::::::::::.::: :.:::::.: :. :::::.::::::::::::::.:::::: gi|338 HFTTTVTRCSPTVAFVEFPSSPQLKNDVSEEKDQKKPENEMSGKVELVLSQKVVKPKSPE 510 520 530 540 550 560 450 460 470 480 490 500 mKIAA1 PEATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDPEEERRRQEKWQ :::::::::::::::.::::::: .::.::::::::: .::::::::::::::::::::: gi|338 PEATLTFPFLDKMPEANQLHLPNLNSQVDSPSSEKSPVTTPFKFWAWDPEEERRRQEKWQ 570 580 590 600 610 620 510 520 530 540 550 560 mKIAA1 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSADQ ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|338 QEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTVSSSSADQ 630 640 650 660 670 680 570 580 590 600 610 620 mKIAA1 LSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGG-LPEEQSLTP :::: :.:::::: ::.:: :: :....:: : :: .:.: ::::::. : :. ::: gi|338 LSTSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSFQGDDSDLLLKTRESDRLEEKGSLTE 690 700 710 720 730 740 630 640 650 660 670 680 mKIAA1 SPSANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKT . :. ::::.:.: ::..:::::::::::: :::: .::: :: : .:::::::: gi|338 GALAHSGNPVSKGVHEDHQLDTEAGAPHCGTNPQLAQDPSQNQQTSNP-THSSEDVKPKT 750 760 770 780 790 800 690 700 710 720 730 740 mKIAA1 LALEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICK : :.:.::::.:::.::::::::::::::::: ::::::::::::::::::::::::::: gi|338 LPLDKSINHQIESPSERRKSISGKKLCSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICK 810 820 830 840 850 860 750 760 770 780 mKIAA1 GQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL :::::::::::::::::::::.::::::::::::::: gi|338 GQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL 870 880 890 785 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 17:08:05 2009 done: Thu Mar 12 17:16:25 2009 Total Scan time: 1098.280 Total Display time: 0.370 Function used was FASTA [version 34.26.5 April 26, 2007]