# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbh02178.fasta.nr -Q ../query/mFLJ00037.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00037, 136 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921243 sequences Expectation_n fit: rho(ln(x))= 4.7176+/-0.000178; mu= 7.9610+/- 0.010 mean_var=62.3673+/-12.164, 0's: 45 Z-trim: 46 B-trim: 0 in 0/65 Lambda= 0.162404 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|47847388|dbj|BAD21366.1| mFLJ00037 protein [Mus ( 136) 941 228.2 3e-58 gi|119593903|gb|EAW73497.1| hypothetical protein P ( 263) 654 161.2 8.6e-38 gi|15214638|gb|AAH12445.1| TRABD protein [Homo sap ( 330) 654 161.2 1e-37 gi|149017528|gb|EDL76532.1| similar to RIKEN cDNA ( 376) 654 161.3 1.1e-37 gi|20141021|sp|Q99JY4.1|TRABD_MOUSE RecName: Full= ( 376) 654 161.3 1.1e-37 gi|20141036|sp|Q9H4I3.1|TRABD_HUMAN RecName: Full= ( 376) 654 161.3 1.1e-37 gi|119593904|gb|EAW73498.1| hypothetical protein P ( 392) 654 161.3 1.2e-37 gi|148672434|gb|EDL04381.1| TraB domain containing ( 422) 654 161.3 1.2e-37 gi|114687042|ref|XP_515215.2| PREDICTED: hypotheti ( 451) 654 161.3 1.3e-37 gi|75057695|sp|Q58DF3.1|TRABD_BOVIN RecName: Full= ( 377) 650 160.4 2.2e-37 gi|194226998|ref|XP_001914911.1| PREDICTED: simila ( 377) 647 159.6 3.5e-37 gi|12857145|dbj|BAB30908.1| unnamed protein produc ( 422) 646 159.5 4.5e-37 gi|73968857|ref|XP_848728.1| PREDICTED: similar to ( 723) 647 159.9 5.8e-37 gi|126338973|ref|XP_001363509.1| PREDICTED: hypoth ( 409) 618 152.9 4.2e-35 gi|149473424|ref|XP_001520057.1| PREDICTED: hypoth ( 641) 620 153.5 4.3e-35 gi|224155652|ref|XP_002189624.1| PREDICTED: simila ( 236) 586 145.2 5e-33 gi|170284886|gb|AAI61290.1| LOC100145566 protein [ ( 367) 586 145.3 7e-33 gi|58701921|gb|AAH90189.1| MGC84987 protein [Xenop ( 373) 585 145.1 8.3e-33 gi|60098601|emb|CAH65131.1| hypothetical protein [ ( 374) 581 144.2 1.6e-32 gi|109094622|ref|XP_001111774.1| PREDICTED: simila ( 320) 501 125.4 6.2e-27 gi|109094612|ref|XP_001111850.1| PREDICTED: hypoth ( 375) 501 125.4 7e-27 gi|109094610|ref|XP_001111734.1| PREDICTED: hypoth ( 378) 501 125.4 7.1e-27 gi|33416437|gb|AAH55655.1| TraB domain containing ( 360) 444 112.1 7.1e-23 gi|47225784|emb|CAF98264.1| unnamed protein produc ( 327) 437 110.4 2.1e-22 gi|10440408|dbj|BAB15737.1| FLJ00037 protein [Homo ( 145) 431 108.7 2.9e-22 gi|37782444|gb|AAP34468.1| LP6054 [Homo sapiens] ( 292) 401 101.9 6.5e-20 gi|151553780|gb|AAI49348.1| TRABD protein [Bos tau ( 342) 400 101.7 8.7e-20 gi|26342523|dbj|BAC25112.1| unnamed protein produc ( 320) 399 101.5 9.7e-20 gi|148672435|gb|EDL04382.1| TraB domain containing ( 348) 398 101.3 1.2e-19 gi|109094620|ref|XP_001111813.1| PREDICTED: simila ( 292) 395 100.5 1.7e-19 gi|118107171|ref|XP_001236183.1| PREDICTED: hypoth ( 216) 378 96.4 2.2e-18 gi|224093482|ref|XP_002189507.1| PREDICTED: TraB d ( 404) 366 93.8 2.5e-17 gi|210128990|gb|EEA76666.1| hypothetical protein B ( 301) 347 89.3 4.3e-16 gi|215507443|gb|EEC16935.1| TraB domain-containing ( 474) 337 87.1 3.1e-15 gi|156220898|gb|EDO41760.1| predicted protein [Nem ( 302) 297 77.6 1.5e-12 gi|187034967|emb|CAP25894.1| Hypothetical protein ( 453) 277 73.0 5.1e-11 gi|193713705|ref|XP_001949250.1| PREDICTED: simila ( 217) 264 69.7 2.4e-10 gi|30794614|gb|AAP40537.1| Hypothetical protein F3 ( 450) 267 70.7 2.6e-10 gi|30794613|gb|AAP40536.1| Hypothetical protein F3 ( 452) 267 70.7 2.6e-10 gi|7500761|pir||T29896 hypothetical protein F38A5. ( 465) 267 70.7 2.6e-10 gi|156554605|ref|XP_001604739.1| PREDICTED: simila ( 443) 265 70.2 3.5e-10 gi|108875368|gb|EAT39593.1| TraB, putative [Aedes ( 513) 265 70.2 3.9e-10 gi|91093675|ref|XP_969585.1| PREDICTED: similar to ( 380) 263 69.7 4.3e-10 gi|190584873|gb|EDV24942.1| hypothetical protein T ( 163) 258 68.2 5.1e-10 gi|157017252|gb|EAL40514.2| AGAP004340-PA [Anophel ( 486) 263 69.8 5.2e-10 gi|167862605|gb|EDS25988.1| TraB [Culex quinquefas ( 502) 262 69.5 6.3e-10 gi|194199552|gb|EDX13128.1| GD20525 [Drosophila si ( 532) 256 68.2 1.7e-09 gi|7299711|gb|AAF54893.1| CG12360, isoform A [Dros ( 532) 256 68.2 1.7e-09 gi|194120328|gb|EDW42371.1| GM25964 [Drosophila se ( 532) 256 68.2 1.7e-09 gi|193894383|gb|EDV93249.1| GH19196 [Drosophila gr ( 563) 255 67.9 2.1e-09 >>gi|47847388|dbj|BAD21366.1| mFLJ00037 protein [Mus mus (136 aa) initn: 941 init1: 941 opt: 941 Z-score: 1202.1 bits: 228.2 E(): 3e-58 Smith-Waterman score: 941; 100.000% identity (100.000% similar) in 136 aa overlap (1-136:1-136) 10 20 30 40 50 60 mFLJ00 TKCCGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|478 TKCCGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAE 10 20 30 40 50 60 70 80 90 100 110 120 mFLJ00 MIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|478 MIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPG 70 80 90 100 110 120 130 mFLJ00 IEKNWSTDLNIQEIMT :::::::::::::::: gi|478 IEKNWSTDLNIQEIMT 130 >>gi|119593903|gb|EAW73497.1| hypothetical protein PP244 (263 aa) initn: 654 init1: 654 opt: 654 Z-score: 834.8 bits: 161.2 E(): 8.6e-38 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:104-206) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|119 HLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 80 90 100 110 120 130 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 140 150 160 170 180 190 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|119 NWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYC 200 210 220 230 240 250 >>gi|15214638|gb|AAH12445.1| TRABD protein [Homo sapiens (330 aa) initn: 654 init1: 654 opt: 654 Z-score: 833.4 bits: 161.2 E(): 1e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:171-273) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|152 HLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 150 160 170 180 190 200 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 210 220 230 240 250 260 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|152 NWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYC 270 280 290 300 310 320 >>gi|149017528|gb|EDL76532.1| similar to RIKEN cDNA 5730 (376 aa) initn: 654 init1: 654 opt: 654 Z-score: 832.6 bits: 161.3 E(): 1.1e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:216-318) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|149 HLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 190 200 210 220 230 240 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 250 260 270 280 290 300 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|149 NWSTDLNIQEIMTVPPPSITGRVSRAAVKAAFFGLLGYSLYWMGRRTVNLVLSLPAAQFC 310 320 330 340 350 360 >>gi|20141021|sp|Q99JY4.1|TRABD_MOUSE RecName: Full=TraB (376 aa) initn: 654 init1: 654 opt: 654 Z-score: 832.6 bits: 161.3 E(): 1.1e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:216-318) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|201 HLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 190 200 210 220 230 240 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 250 260 270 280 290 300 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|201 NWSTDLNIQEIMTVPPPSISGRVSRVAVKAAFFGLLGYSLYWMGRRTLNLVLSLPAAQFC 310 320 330 340 350 360 >>gi|20141036|sp|Q9H4I3.1|TRABD_HUMAN RecName: Full=TraB (376 aa) initn: 654 init1: 654 opt: 654 Z-score: 832.6 bits: 161.3 E(): 1.1e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:217-319) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|201 HLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 190 200 210 220 230 240 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 250 260 270 280 290 300 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|201 NWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYC 310 320 330 340 350 360 >>gi|119593904|gb|EAW73498.1| hypothetical protein PP244 (392 aa) initn: 654 init1: 654 opt: 654 Z-score: 832.4 bits: 161.3 E(): 1.2e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:233-335) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|119 HLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 210 220 230 240 250 260 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 270 280 290 300 310 320 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|119 NWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYC 330 340 350 360 370 380 >>gi|148672434|gb|EDL04381.1| TraB domain containing, is (422 aa) initn: 654 init1: 654 opt: 654 Z-score: 831.9 bits: 161.3 E(): 1.2e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:262-364) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|148 HLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 240 250 260 270 280 290 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 300 310 320 330 340 350 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|148 NWSTDLNIQEIMTVPPPSISGRVSRVAVKAAFFGLLGYSLYWMGRRTLNLVLSLPAAQFC 360 370 380 390 400 410 >>gi|114687042|ref|XP_515215.2| PREDICTED: hypothetical (451 aa) initn: 654 init1: 654 opt: 654 Z-score: 831.5 bits: 161.3 E(): 1.3e-37 Smith-Waterman score: 654; 94.175% identity (97.087% similar) in 103 aa overlap (34-136:349-451) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .::::::::::::::::::::::: gi|114 HLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIG 320 330 340 350 360 370 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 380 390 400 410 420 430 130 mFLJ00 NWSTDLNIQEIMT ::::::::::::: gi|114 NWSTDLNIQEIMT 440 450 >>gi|75057695|sp|Q58DF3.1|TRABD_BOVIN RecName: Full=TraB (377 aa) initn: 650 init1: 650 opt: 650 Z-score: 827.5 bits: 160.4 E(): 2.2e-37 Smith-Waterman score: 650; 92.233% identity (97.087% similar) in 103 aa overlap (34-136:217-319) 10 20 30 40 50 60 mFLJ00 CGPFPESTTQTSHVSIPMVCLRAPVHPTHTCCMPSALSKDDVERCKQKDLLEQMMAEMIG : . . .:::::::::::::::::::::.: gi|750 HLGDRPIPVTFKRAIAALSLWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMVG 190 200 210 220 230 240 70 80 90 100 110 120 mFLJ00 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 EFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 250 260 270 280 290 300 130 mFLJ00 NWSTDLNIQEIMT ::.:::::::::: gi|750 NWTTDLNIQEIMTVPPPSASGRVSRLAVKAAALGLLGYGLYWTGRRAVSLLLALPAARHC 310 320 330 340 350 360 136 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 13:42:43 2009 done: Thu Mar 12 13:46:38 2009 Total Scan time: 565.420 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]