FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0909.ptfa, 1183 aa vs ./tmplib.26680 library 1767834 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.0563+/-0.00846; mu= -10.1815+/- 0.562 mean_var=365.7863+/-89.285, 0's: 0 Z-trim: 2 B-trim: 128 in 1/35 Lambda= 0.0671 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0833 ( 1523 res) mbg02479 (1523) 710 83 3e-16 >>mKIAA0833 ( 1523 res) mbg02479 (1523 aa) initn: 2256 init1: 678 opt: 710 Z-score: 384.2 bits: 83.4 E(): 3e-16 Smith-Waterman score: 2697; 40.380% identity (58.318% ungapped) in 1528 aa overlap (107-1174:1-1518) 80 90 100 110 120 130 mKIAA0 GKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQNPDIVLVHYLNVPALEDCG :::::::::::::::::::::::::.:::: mKIAA0 TFHRRCYWLLQNPDIVLVHYLNVPAIEDCG 10 20 30 140 150 160 170 180 190 mKIAA0 KGCSPIFCSISSDRREWLKWSREELLGQLKPMFHGIKWSCGNGAEE--FSVEQLVQQILD : :.::.:::..:..:: ::..:::.::::::::::::.:.:: :::::::::::: mKIAA0 KPCGPILCSINTDKKEWAKWTKEELIGQLKPMFHGIKWTCSNGNSSSGFSVEQLVQQILD 40 50 60 70 80 90 200 210 220 230 240 mKIAA0 THPTKPAPRTHACLCSGGLGSGS-LTHKCSSTKHRIISPKVEPRALAL---ASISHSK-- .: ::: :::: :::.:.::.:: . :::.:.::::::::::::: . . ..:. mKIAA0 SHQTKPQPRTHNCLCTGSLGAGSSVHHKCNSAKHRIISPKVEPRAGGYGGHSEVQHNDVS 100 110 120 130 140 150 250 260 270 280 mKIAA0 --PPEP-----------------PPLIAPLPPELPKAHT--SPSSSSSS--SSSSGFAEP :: : :. :. ... :....:: : :::. mKIAA0 EGKHEPSHGRSTSREKRNGKVAKPALLHQNSTEVSSTNQVEVPDTTQSSPVSISSGLNSD 160 170 180 190 200 210 290 300 310 320 330 mKIAA0 LEIRPSPPTSRGGSSRGGTAILLLTGLEQRAGGLTP------TRHLAPQAEP-----RPP .. :: .. : :: . .... :: : : . . ..: : : : mKIAA0 PDMVDSPVVT-GVSSMAVASVM--GGLSQSATVFMSEVTNEAVYTMSPTAGPNHHLLSPD 220 230 240 250 260 340 350 mKIAA0 VSLAVVV--------------GSEPSAPPAP-------------------PSPA--FDPD .: ..:. :: : : : : :::: mKIAA0 ASQGLVLAVSSDGHKFAFPTTGSSDSLSMLPANVSEELVLSTTLDGGRKIPETAMNFDPD 270 280 290 300 310 320 360 370 380 390 mKIAA0 RFLNSPQRGQTYGGGQGVNPDFPEAEGTHTPCPA------------------------LE :::.:..::::::: :.. .. .. :.: :: . mKIAA0 CFLNNPKQGQTYGGG-GLKAEMVSTNIRHSP-PAERSFGFTSVLTKEIKTEDTSFEQQMA 330 340 350 360 370 380 400 410 420 mKIAA0 PAAALEPQAAAR-------------------GLAP-----QLGANGRRGNK--------- :: .::: ::.: :. .. .:: mKIAA0 KEAAYSSSAAAAASSSLTLTAAGSSLLPSGGGLSPSTTLEQMDFSAIDSNKDYASSFSQT 390 400 410 420 430 440 430 440 450 mKIAA0 -------------FFIQDDDSGEELK----------GPGTVPPVPSSPPSSPSSPT---- ::.:: .. :. : . : :. .. :: .: mKIAA0 GHSPHIHQTPSPSFFLQDASKPLPLEQNTHSSLSESGAAFVMPTVKTEASSQTSSCSGHV 450 460 470 480 490 500 460 470 mKIAA0 --------------------ALPPSG-------RATRG-EALF----------------- :. : .:..: :.:. mKIAA0 ETRIESTSSLHLMQFQANFQAMAAEGEVTMETSQAAEGNEVLLKSGELQACGSEHYLQPE 510 520 530 540 550 560 480 490 mKIAA0 --------GG------------------SAGSSSELE----PFSLS---SFPDLMGELIS :: : :.::..: :..: .: ::....:: mKIAA0 TNGVIRSAGGVPLLPSNVVQGLYPVAQPSLGNSSNMELSLDHFDISFSNQFSDLINDFIS 570 580 590 600 610 620 500 510 mKIAA0 DE---------------------------AP------GVPAPAPQ-----LS-----PAL : :: .: .:: :: :. mKIAA0 VEGGSGTIYGHQLVSGDSAALSQSEDGARAPFTQAEMCIPCCSPQQGSLQLSSAEGGPST 630 640 650 660 670 680 520 530 540 mKIAA0 NA----------------------------ITDFSPEWSYPEGGVKVLITGPWTEAAEHY : .::.::::::::::::::::::: ::...: mKIAA0 MAYMHVAEVVSAASAQGALGMLQQSGRVFMVTDYSPEWSYPEGGVKVLITGPWQEASNNY 690 700 710 720 730 740 550 560 570 580 590 600 mKIAA0 SCVFDHIAVPASLVQPGVLRCYCPAHEVGLVSLQVAGREGPLSASVLFEYRARRFLSLPS ::.::.:.:::::.::::::::::::..:::.:::: . .: ::.:::.:: . .::: mKIAA0 SCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQIISNSVVFEYKARALPTLPS 750 760 770 780 790 800 610 620 630 640 650 mKIAA0 TQLDWLSLDDSQFRMSILERLEQMEKRMAEIAAA----------GQAPGQGPEAPPIQDE .: :::::::.::::::::::::::.::::.... :.. :.: : : . mKIAA0 SQHDWLSLDDNQFRMSILERLEQMERRMAEMTGSQQHKQASGGGGSGSGSGSGAGGGQAQ 810 820 830 840 850 860 660 670 680 690 700 710 mKIAA0 -GQGPG-----FEARVVVLVESMIPRSTWRGPERLIHGSPFRGMSLLHLAAAQGYARLIE ..: : ::.::::. :.:. :. : ..:::.. ::::.::::::::::: ::. mKIAA0 CASGAGTLGSCFESRVVVVCEKMMSRACWAKSKHLIHSKTFRGMTLLHLAAAQGYATLIQ 870 880 890 900 910 920 720 730 740 750 760 770 mKIAA0 TLSQWRSVETGSLDLEQEVDPLNVDHFSCTPLMWACALGHLEAAVLLFCWNRQALSIPDS :: .::. .. :.::: ::::::::::::::::::::::::::::.:. :.:.:.::::: mKIAA0 TLIKWRTKHADSIDLELEVDPLNVDHFSCTPLMWACALGHLEAAVVLYKWDRRAISIPDS 930 940 950 960 970 980 780 790 800 mKIAA0 LGRLPLSVAHSRGHVRLARCLEELQRQELS------------VEHPL-----------AL ::::::..:.:::::.::.:::.:::.: . :.: :. mKIAA0 LGRLPLGIARSRGHVKLAECLEHLQRDEQAQLGQASRIHCAPSEEPTTDSWMAQWQREAM 990 1000 1010 1020 1030 1040 810 820 830 mKIAA0 SPP----------SSSPDT--------------GLSSASSPSE--LSDGTFS------VT ::: :..:. : .. .:.. :. .:. . mKIAA0 SPPEIPKGVTVIASTNPELRRPRSEPSNYYSTEGHKDYPAPKKHKLNPESFQARQEKLLC 1050 1060 1070 1080 1090 1100 840 850 860 870 mKIAA0 SAYS-SAPD---GSP---PPAPPLAS------DISMEMIP-------GQLSCGAPETPLL .: : :. :: :.: : . : : : .: : . : . mKIAA0 TALSLEQPNIRKQSPRSKQPSPETISPSEGVREYSREAAPPTPETAASQASASQPVVKWS 1110 1120 1130 1140 1150 1160 880 890 900 mKIAA0 LMD-YEATNS-------------KEPAPSPCGP--PLA-----------QDNGAA---PE : : .... :. ::: : :.. . :: : mKIAA0 AKDLYIGVSTVQVTGNPKGTSVVKDAAPSQVRPREPMSVLMLANREVVNTEMGAYRDRTE 1170 1180 1190 1200 1210 1220 910 920 930 940 950 960 mKIAA0 DADSPPAVDVIPVDMISLAKQIIDATPERIKREDFSEFPDAGASPREHTGTVGLSETMSW : : .: : :.:..::..::.:::.:::.:.: . .: :.: . .: :::: mKIAA0 HEDCPQPMDDIQVNMMTLAEHIIEATPDRIKQENFVPME---SSALERTDPATISSTMSW 1230 1240 1250 1260 1270 1280 970 980 990 1000 mKIAA0 LASYLENVDHFPSSA-----------------------PPSELPFERGRLAIPPAPSWAE ::::: ..:..::.: : ::. ::. : : : .:.: mKIAA0 LASYLADADRLPSAAHIRSAYTEPLTPSSNASLSPAGSPVSEVAFEKPSL--PSAADWSE 1290 1300 1310 1320 1330 1340 1010 1020 1030 1040 1050 1060 mKIAA0 FLSASTSGKMESDFALLTLSDHEQRELYEAARVIQTAFRKYKGRRLKEQQEVAAAVIQRC ::::::: :.::..: ::::::::::::::::..:::::::::: :.::::::::::::: mKIAA0 FLSASTSEKVESELAQLTLSDHEQRELYEAARLVQTAFRKYKGRPLREQQEVAAAVIQRC 1350 1360 1370 1380 1390 1400 1070 1080 1090 1100 1110 1120 mKIAA0 YRKYKQLTWIALKFALYKKMTQAAILIQSKFRSYYEQKRFQQSRRAAVLIQQHYRSYRR- :::::::::::::.:::::::::::::::::::::::::::::::::::::. ::::.. mKIAA0 YRKYKQLTWIALKYALYKKMTQAAILIQSKFRSYYEQKRFQQSRRAAVLIQNFYRSYKKC 1410 1420 1430 1440 1450 1460 1130 1140 1150 1160 1170 mKIAA0 -RPGPPHRPSGPLPARNKGTFLTKKQDQAARKIMRFLRRCRHR----MRELKQNQELEGL : : .: . . . ....::::::::::::::::::::: : :.....: mKIAA0 GRRRPARRTAVIVQQKLRSSLLTKKQDQAARKIMRFLRRCRHSPLVDHRLYKRSERIEKG 1470 1480 1490 1500 1510 1520 1180 mKIAA0 PQPGLAT mKIAA0 QGT 1183 residues in 1 query sequences 1767834 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:31:44 2006 done: Mon Mar 27 10:31:45 2006 Scan time: 1.130 Display time: 0.170 Function used was FASTA [version 3.4t11 Apr 17, 2002]