FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0757.ptfa, 540 aa
 vs ./tmplib.26680 library

1768477 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.5672+/-0.0048; mu= 12.4719+/- 0.320
 mean_var=122.5203+/-29.467, 0's: 0 Z-trim: 3  B-trim: 160 in 1/35
 Lambda= 0.1159

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4138  ( 434 res)   mbg16412                   ( 434)  195   44   4e-05


>>mKIAA4138  ( 434 res)   mbg16412                        (434 aa)
 initn: 159 init1: 159 opt: 195  Z-score: 184.4  bits: 43.5 E(): 4e-05
Smith-Waterman score: 195;  22.493% identity (24.128% ungapped) in 369 aa overlap (94-447:72-430)

            70        80        90       100       110       120   
mKIAA0 AAATLLSLHKVDPLYRFRLIQFYEVVESSLRSLSSSSLSALHCAFSMLETMAINLFLFPW
                                     :.  . .:. :  :: .::  :..:.:.::
mKIAA4 VLWQILVEDFDLHGALQDDALALFTDGLWGRADLAPALQDLARAFELLELAAVHLYLLPW
              50        60        70        80        90       100 

           130       140       150       160       170       180   
mKIAA0 KKEFRSIKVRWGPFVYYVKSTLLEKDIRAILRFMGYEPELGTVYKLKELVESLQVKMVSF
       .::: .::.  : .:. .:..: :. .   .. :::  . .    .     . :. .:..
mKIAA4 RKEFTTIKTFSGGYVHVLKGVLSEELLTRSFQKMGYVRRDNHRLMVTTPPPACQLVQVAL
             110       120       130       140       150       160 

           190       200       210       220       230       240   
mKIAA0 ELFLAKVECEQMLGIHSQVKDKGYSELDVVAERKGSTEDARGCSDALRRRAESREHLTTS
         :  ..::: .  . .:.  .     ...  :..:  :. .:   :..:  . :.    
mKIAA4 GCFALRLECEILSEVLTQLGTSVLPAEELLRARRASG-DVASCVAWLQQRLAQDEEPPPL
             170       180       190        200       210       220

           250       260       270       280            290        
mKIAA0 MARVALQKSASERAAKDYYKPRVTKPSRSVDAYDSYWES-RKPPS----KASLSLRKEPL
         :      :.  :  : :.      :  .. :     .  .::     .  :  ..  :
mKIAA4 PPR---GTPATYGAPVDLYQDLQEDESSEASLYGEPSPGLDSPPVELAYRPPLWEQSAKL
                 230       240       250       260       270       

      300       310       320        330       340       350       
mKIAA0 AMDVGEDLKDEIIRPSPSLLAMSSSPHGS-PDDLSSISSINGLGLLRSTYFSTQDDVDLY
         . :.  .     :. ..   :: :.:.  ..:    :  ..  ::     . : .   
mKIAA4 WGSGGQPWEP----PADDMHRASSPPYGALEEELEPEPSAFSFLSLRRELSRSGDLAPPE
       280           290       300       310       320       330   

       360        370       380        390         400             
mKIAA0 TDSEPR-ATYRRQDALRPDVWLVKNDTHPI-YHKRS--PPTKESALSKCQNC----GLSC
       . : :: :. :...:           ..:. :. .:   : .  .:  :..:    .  :
mKIAA4 SPSSPRQASPRHRQAEAAASSAYGPAVEPLSYQAHSCLSPGNLPTLC-CDTCRQLHATHC
           340       350       360       370       380        390  

     410        420       430       440       450       460        
mKIAA0 SS-SLCQRCDSVLVCPSASKPSAFPSKASVHDSLAHGAPMREKYVGHQTQGLDRLAPVHS
       .. : :.   :. .  . ..   . ..:.: :.: . .:                     
mKIAA4 TALSACRPTHSLRILLGDNQRRLWLQRAQV-DNLLYDSPGAHP                 
            400       410       420        430                     

      470       480       490       500       510       520        
mKIAA0 KPKPSTTATSRCGFCNRAGATNTCTQCSKVSCDACLGAYHYDPCCRKSELHKFLPNSQLN




540 residues in 1 query   sequences
1768477 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:28:00 2006 done: Mon Mar 27 10:28:01 2006
 Scan time:  0.750 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]