FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0371.ptfa, 379 aa
 vs ./tmplib.26680 library

1768638 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.9228+/-0.00515; mu= 5.2749+/- 0.342
 mean_var=152.5892+/-37.144, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1038

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0647  ( 1186 res)   mbg01911                  (1186)  243   48 3.8e-06


>>mKIAA0647  ( 1186 res)   mbg01911                       (1186 aa)
 initn: 243 init1: 217 opt: 243  Z-score: 202.8  bits: 47.9 E(): 3.8e-06
Smith-Waterman score: 253;  26.128% identity (31.609% ungapped) in 421 aa overlap (1-359:633-1042)

                                             10           20       
mKIAA0                               TKEESGVEEPTH---RGHTEVPEVKEEAPL
                                     ..:  :  :: :   .:   : .    .: 
mKIAA0 KTRSMDDLLSACDTSSPLTRTSSDPNLNNHSQEVRGSLEPWHSSPEGAETVIDSGVGSPQ
            610       620       630       640       650       660  

        30        40        50        60          70               
mKIAA0 AKESSMAAEGPVVLYQEPQLDDATLRSHQGPSLS--LFSQGIPEHQDGHN----VL--SS
          . :.   :.   :.  :..  ...:.. :::  :.. ..  .. ...    ::  . 
mKIAA0 LTVGEMGLPPPLPSSQKEYLSNKPFKGHKSCSLSYKLLNTSVSWEMKSNTSDIKVLEETE
            670       680       690       700       710       720  

      80        90          100       110       120       130      
mKIAA0 SLQAPLRGEESQEVPVE---QPQVENIAEDRENVAPAVPVDAKVGLGISQSSSLLPSQVP
       .:     ..: :    .   .:  :.. : .: :.    :..: : :  .     : : :
mKIAA0 ALAPDPSAQEEQGRTSDGLGKPP-EQFLE-KEAVSSLCSVSSKCG-GACDFPE--PPQDP
            730       740        750        760        770         

          140       150       160       170       180       190    
mKIAA0 FE--TRGPHINNSVHMLLEDKVKSESGPQLHHRPCPASSGRFSGKDMLPVAPEPRSA---
       .    . ::.. :...     . ..:  .: . :  ::.    . :.:   :   .:   
mKIAA0 LTGTPQQPHLD-SMQISPSRCTPDHSQGSLCNPPSVASQTPEPNTDLLSQDPPGSTASIS
       780        790       800       810       820       830      

                200       210             220           230        
mKIAA0 --ERPQ-WDSVLHRTSSPGNTLS----LLQAP--CALPLDKCRQGI----VCNGALETEN
         :.:.   .....  . :.  :    ::. :    .::.  :. :    . . ..   :
mKIAA0 HQEQPSSVPDLIYKKEDAGKRGSKNGQLLENPRFGKMPLELARKPISQSQISEFSFLGSN
        840       850       860       870       880       890      

      240                      250            260            270   
mKIAA0 KASEQ------PAG---------FDTLQKYPT-----PNGHC--ANW---EAGRSKDSLS
         : :      :.:         .   .: :.       : :  ..:   :. .:    :
mKIAA0 WDSFQGMMTSFPSGETTPRRLLAYGCCSKRPSNKHIRAAGPCLGGQWAQREGMKSPVCSS
        900       910       920       930       940       950      

           280       290            300       310       320        
mKIAA0 HQLSATSCSSAHLYSRNLHHKWLNSH-----SGRPSTTSSPDQPSRSHLDDDGMPVYTDT
       :  :   :..    ..: .. :..::     : .::  : :.     .:::::.:  ::.
mKIAA0 H--SNGHCTGPG--GKN-NRMWFSSHPKQVSSTKPSLLSCPSPVPPLYLDDDGLPFPTDV
          960          970       980       990      1000      1010 

      330       340       350       360       370                  
mKIAA0 IQQRLRQIESGHQQEVETLKKQVQELKSRLESQYLTSSLRFNGDFGDEVVS         
       ::.::::::.:..:::: :..::.::. ::.                             
mKIAA0 IQHRLRQIEAGYRQEVEQLRRQVRELQMRLDIRHCCAPPAEPPMDYEDDFTCLKESDGSD
            1020      1030      1040      1050      1060      1070 

mKIAA0 TEDFGSDHSEDCLSEASWEPVDKKETEVTRWVPDHMASHCFNCDCEFWLAKRRHHCRNCG
            1080      1090      1100      1110      1120      1130 




379 residues in 1 query   sequences
1768638 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:19:05 2006 done: Mon Mar 27 10:19:05 2006
 Scan time:  0.610 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]