FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0844.ptfa, 432 aa
 vs ./tmplib.26680 library

1768585 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.5455+/-0.00597; mu= 7.0278+/- 0.397
 mean_var=190.0463+/-46.068, 0's: 0 Z-trim: 3  B-trim: 25 in 1/35
 Lambda= 0.0930

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1940  ( 865 res)   mbg18268                   ( 865)  364   61 2.8e-10


>>mKIAA1940  ( 865 res)   mbg18268                        (865 aa)
 initn: 514 init1: 308 opt: 364  Z-score: 276.8  bits: 61.3 E(): 2.8e-10
Smith-Waterman score: 461;  28.976% identity (35.092% ungapped) in 459 aa overlap (52-430:1-459)

              30        40        50        60        70        80 
mKIAA0 TFRVMQQTTFEESRYHWQDSLENVAVCLPFRCPRCGDHTRFRSLSSLRAHLEFSHSYEER
                                     ::::::.: :::::::::::::.::.::  
mKIAA1                               RCPRCGEHKRFRSLSSLRAHLEYSHTYETL
                                             10        20        30

                               90       100           110       120
mKIAA0 TLLTK----C-------------SLLPSLKDTELLRSSELPK----QGKVLRGHAKVTKQ
        .:.:    :             : .:   .   : .    .    ..  ..:. ..:  
mKIAA1 YILSKTNSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQATGP
               40        50        60        70        80        90

              130                 140       150       160          
mKIAA0 KPSYVNLYSISHGHSK------D----TKPFEMVAERPVSYVQTYTAVDIR---------
       .:.  .:    : :.       :    . : : .::  .  .  :.  .:.         
mKIAA1 SPAGPHLLHHHHHHAPLAHFPADLVPASLPCEELAEPGLVPAARYALREIEIPLGELFAR
              100       110       120       130       140       150

                         170                        180       190  
mKIAA0 ---ADSL---------DAPCASP-----------------GLPTQDTKAAFEAHVREKFN
          :.:           .::..:                 ::     .:  . .: ....
mKIAA1 KSVASSACSTPPPGPGPGPCSGPSSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLE
              160       170       180       190       200       210

            200       210       220       230       240       250  
mKIAA0 RMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFAQLTQKKQEVQRRERALNKQVDVAV
       :. : :.. :  .. .:  :: .:.:::  .:   :.: ..:.:...:   :..::::.:
mKIAA1 RLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSV
              220       230       240       250       260       270

            260       270       280       290       300       310  
mKIAA0 EMIAVLKQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAE
       :..: ::: :...:.:: ::..::: ...::. .: .:...: :::.:::.::.:.. ::
mKIAA1 ELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAE
              280       290       300       310       320       330

            320       330          340       350        360        
mKIAA0 KQLEYYQSQQASGFSCDTSEH---LTDIPSNRKPRCLSRGHQHS-VCNHPELRAHFHLK-
       .::.  .:. .:  : . ..     .. :. : :  . . :  : : .   .  :     
mKIAA1 RQLQVISSSCGSTPSASLGRGGGGSASGPGVRGPGRMREHHAGSAVPSTYAVSRHGSSPS
              340       350       360       370       380       390

        370       380         390       400       410          420 
mKIAA0 -GRSYLKKAKDERAGMQPAKAIH--EPAESPREFFRPAKKGEHLGLSRKGNFR---PKMA
        : :    : .. .:   . ...  .: :.: :   :.  : .   .  :. :   :. .
mKIAA1 TGASSRVPAASQSSGCYDSDSLELPRPEEGPSEDSGPGGLGSRAQATNGGSERSQAPRSS
              400       410       420       430       440       450

             430                                                   
mKIAA0 KKKPTAIVNII                                                 
         .  :: :                                                   
mKIAA1 GLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDVPRPGPAVAGPLNSCRL
              460       470       480       490       500       510




432 residues in 1 query   sequences
1768585 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:30:07 2006 done: Mon Mar 27 10:30:08 2006
 Scan time:  0.640 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]