# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbh01164.fasta.nr -Q ../query/mKIAA1403.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1403, 1444 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920005 sequences Expectation_n fit: rho(ln(x))= 5.7842+/-0.00019; mu= 13.2253+/- 0.011 mean_var=91.6471+/-17.754, 0's: 30 Z-trim: 33 B-trim: 3 in 1/65 Lambda= 0.133972 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|109731409|gb|AAI17975.1| RNA polymerase II asso (1409) 9426 1833.0 0 gi|109730829|gb|AAI17974.1| RNA polymerase II asso (1409) 9405 1828.9 0 gi|74147477|dbj|BAE38647.1| unnamed protein produc (1409) 9361 1820.4 0 gi|145566940|sp|Q80TE0.2|RPAP1_MOUSE RecName: Full (1409) 9361 1820.4 0 gi|74195684|dbj|BAE39647.1| unnamed protein produc (1409) 9339 1816.2 0 gi|74149579|dbj|BAE36419.1| unnamed protein produc (1290) 8495 1653.0 0 gi|123780902|sp|Q3T1I9.1|RPAP1_RAT RecName: Full=R (1400) 6815 1328.3 0 gi|109080733|ref|XP_001101155.1| PREDICTED: simila (1393) 6117 1193.4 0 gi|114656484|ref|XP_001150221.1| PREDICTED: RNA po (1156) 6081 1186.4 0 gi|114656478|ref|XP_510325.2| PREDICTED: RNA polym (1393) 6081 1186.5 0 gi|119612910|gb|EAW92504.1| RNA polymerase II asso (1393) 6075 1185.3 0 gi|24430139|ref|NP_056355.2| RNA polymerase II ass (1393) 6071 1184.5 0 gi|74733434|sp|Q9BWH6.2|RPAP1_HUMAN RecName: Full= (1393) 6070 1184.3 0 gi|149692044|ref|XP_001503457.1| PREDICTED: simila (1393) 6062 1182.8 0 gi|74000205|ref|XP_544632.2| PREDICTED: similar to (1394) 5966 1164.2 0 gi|145566939|sp|A0JN53.1|RPAP1_BOVIN RecName: Full (1395) 5958 1162.7 0 gi|30388713|gb|AAH51680.1| Rpap1 protein [Mus musc ( 799) 5405 1055.6 0 gi|119612909|gb|EAW92503.1| RNA polymerase II asso (1315) 5398 1054.4 0 gi|148696026|gb|EDL27973.1| RNA polymerase II asso (1328) 5261 1028.0 0 gi|158261471|dbj|BAF82913.1| unnamed protein produ (1195) 4961 969.9 0 gi|149023033|gb|EDL79927.1| RNA polymerase II asso ( 895) 4646 909.0 0 gi|10434402|dbj|BAB14247.1| unnamed protein produc ( 772) 4192 821.2 0 gi|55730221|emb|CAH91834.1| hypothetical protein [ (1074) 3941 772.8 0 gi|224051155|ref|XP_002199018.1| PREDICTED: RNA po (1423) 3769 739.6 3.7e-210 gi|5911955|emb|CAB55952.1| hypothetical protein [H ( 633) 3519 691.0 6.9e-196 gi|119612911|gb|EAW92505.1| RNA polymerase II asso ( 607) 3363 660.9 8e-187 gi|119612908|gb|EAW92502.1| RNA polymerase II asso ( 553) 3012 593.0 2e-166 gi|118091619|ref|XP_421141.2| PREDICTED: similar t (1325) 2552 504.4 2.3e-139 gi|50949393|emb|CAB75675.2| hypothetical protein [ ( 398) 2224 440.6 1.1e-120 gi|15126571|gb|AAH12218.1| Rpap1 protein [Mus musc ( 295) 2009 398.9 2.8e-108 gi|47230102|emb|CAG10516.1| unnamed protein produc (1443) 1975 392.9 9e-106 gi|10801656|dbj|BAB16745.1| hypothetical protein [ ( 301) 1711 341.3 6.1e-91 gi|26335325|dbj|BAC31363.1| unnamed protein produc ( 262) 1676 334.5 6e-89 gi|47125215|gb|AAH70764.1| MGC83792 protein [Xenop (1421) 1602 320.8 4.5e-84 gi|210093209|gb|EEA41417.1| hypothetical protein B (1330) 1297 261.8 2.4e-66 gi|115692080|ref|XP_793628.2| PREDICTED: similar t (1457) 1184 240.0 9.5e-60 gi|124481862|gb|AAI33246.1| LOC445849 protein [Xen ( 529) 906 185.9 6.5e-44 gi|189441999|gb|AAI67356.1| LOC100170469 protein [ ( 548) 906 185.9 6.7e-44 gi|50414577|gb|AAH77222.1| LOC445849 protein [Xeno ( 531) 903 185.3 9.8e-44 gi|210128964|gb|EEA76640.1| hypothetical protein B (1274) 756 157.2 6.9e-35 gi|26332379|dbj|BAC25083.1| unnamed protein produc ( 97) 652 136.3 1.1e-29 gi|156537520|ref|XP_001607465.1| PREDICTED: simila (1210) 620 130.9 5.4e-27 gi|149619901|ref|XP_001521420.1| PREDICTED: simila ( 148) 601 126.6 1.4e-26 gi|156227825|gb|EDO48627.1| predicted protein [Nem (1151) 581 123.4 9.7e-25 gi|198425413|ref|XP_002124620.1| PREDICTED: simila ( 959) 522 111.9 2.3e-21 gi|189241205|ref|XP_970145.2| PREDICTED: similar t (1125) 478 103.4 9.3e-19 gi|110768245|ref|XP_624143.2| PREDICTED: similar t (1030) 455 99.0 1.9e-17 gi|212510298|gb|EEB13497.1| predicted protein [Ped (1352) 398 88.0 4.9e-14 gi|190583950|gb|EDV24020.1| hypothetical protein T ( 750) 372 82.8 1e-12 gi|60469337|gb|EAL67331.1| hypothetical protein DD (1589) 375 83.6 1.2e-12 >>gi|109731409|gb|AAI17975.1| RNA polymerase II associat (1409 aa) initn: 9426 init1: 9426 opt: 9426 Z-score: 9838.6 bits: 1833.0 E(): 0 Smith-Waterman score: 9426; 100.000% identity (100.000% similar) in 1409 aa overlap (36-1444:1-1409) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|109 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT 1360 1370 1380 1390 1400 >>gi|109730829|gb|AAI17974.1| RNA polymerase II associat (1409 aa) initn: 9405 init1: 9405 opt: 9405 Z-score: 9816.6 bits: 1828.9 E(): 0 Smith-Waterman score: 9405; 99.787% identity (99.929% similar) in 1409 aa overlap (36-1444:1-1409) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|109 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|109 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|109 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSRIVGRAQAGEFGDRLVGSV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|109 EPAEDSLPLLQLYFWALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT 1360 1370 1380 1390 1400 >>gi|74147477|dbj|BAE38647.1| unnamed protein product [M (1409 aa) initn: 9361 init1: 9361 opt: 9361 Z-score: 9770.7 bits: 1820.4 E(): 0 Smith-Waterman score: 9361; 99.148% identity (99.787% similar) in 1409 aa overlap (36-1444:1-1409) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|741 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|741 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGHPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|741 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|741 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSFRDRSNQLPGRSHGFHRPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|741 MPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TCPGPSVILDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :::::::::::.::::::::::::::::::::::::::::::::::.::::::::::::: gi|741 LSAVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSFAHKAATLQPEPAA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::::::::::::::.::::::::::::::::::::::::::: :::::::::::::::: gi|741 GDPQCRRGALLVQACRDLPSIRSCYLAHCSPARASLLSSQALYCGELLRVSSLLLPVPKE 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|741 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLTLFGEHVGVLRALGLPLTQLPVPLECYT 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|741 EPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT 1360 1370 1380 1390 1400 >>gi|145566940|sp|Q80TE0.2|RPAP1_MOUSE RecName: Full=RNA (1409 aa) initn: 9361 init1: 9361 opt: 9361 Z-score: 9770.7 bits: 1820.4 E(): 0 Smith-Waterman score: 9361; 99.148% identity (99.787% similar) in 1409 aa overlap (36-1444:1-1409) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|145 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|145 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGHPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|145 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|145 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSFRDRSNQLPGRSHGFHRPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|145 QTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|145 MPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 TCPGPSVILDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 CNPLSCASNPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :::::::::::.::::::::::::::::::::::::::::::::::.::::::::::::: gi|145 LSAVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSFAHKAATLQPEPAA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::::::::::::::.::::::::::::::::::::::::::: :::::::::::::::: gi|145 GDPQCRRGALLVQACRDLPSIRSCYLAHCSPARASLLSSQALYCGELLRVSSLLLPVPKE 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|145 EPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT 1360 1370 1380 1390 1400 >>gi|74195684|dbj|BAE39647.1| unnamed protein product [M (1409 aa) initn: 9339 init1: 9339 opt: 9339 Z-score: 9747.7 bits: 1816.2 E(): 0 Smith-Waterman score: 9339; 98.935% identity (99.645% similar) in 1409 aa overlap (36-1444:1-1409) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|741 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|741 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGHPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|741 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|741 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSFRDRSNQLPGRSHGFHRPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::::::::::::::: :::::::::::::::::::::::::::::::: :::::::::: gi|741 MPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLATNQLPRLRYVLEV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TCPGPSVILDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ ::::::::. :::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 CNPLSCASNQEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :::::::::::.::::::::::::::::::::::::::::::::::.::::::::::::: gi|741 LSAVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSFAHKAATLQPEPAA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::::::::::::::.::::::::::::::::::::::::::: :::::::::::::::: gi|741 GDPQCRRGALLVQACRDLPSIRSCYLAHCSPARASLLSSQALYCGELLRVSSLLLPVPKE 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RLARLMCVYLVDNELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|741 EPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM 1300 1310 1320 1330 1340 1350 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT 1360 1370 1380 1390 1400 >>gi|74149579|dbj|BAE36419.1| unnamed protein product [M (1290 aa) initn: 8524 init1: 8495 opt: 8495 Z-score: 8866.6 bits: 1653.0 E(): 0 Smith-Waterman score: 8495; 99.064% identity (99.766% similar) in 1282 aa overlap (36-1317:1-1282) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|741 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|741 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGHPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|741 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|741 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSFRDRSNQLPGRSHGFHRPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|741 QTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|741 MPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TCPGPSVILDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY 580 590 600 610 620 630 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA 640 650 660 670 680 690 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL 700 710 720 730 740 750 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV 760 770 780 790 800 810 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL 820 830 840 850 860 870 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 CNPLSCASNPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ 880 890 900 910 920 930 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :::::::::::.::::::::::::::::::::::::::::::::::.::::::::::::: gi|741 LSAVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSFAHKAATLQPEPAA 940 950 960 970 980 990 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS 1000 1010 1020 1030 1040 1050 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::::::::::::::.::::::::::::::::::::::::::: :::::::::::::::: gi|741 GDPQCRRGALLVQACRDLPSIRSCYLAHCSPARASLLSSQALYCGELLRVSSLLLPVPKE 1060 1070 1080 1090 1100 1110 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA 1120 1130 1140 1150 1160 1170 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF 1180 1190 1200 1210 1220 1230 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT :::::::::::::::::::::::::::::::::::::::::::::::::::. gi|741 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQVCPTLSRPS 1240 1250 1260 1270 1280 1290 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM >>gi|123780902|sp|Q3T1I9.1|RPAP1_RAT RecName: Full=RNA p (1400 aa) initn: 5898 init1: 4097 opt: 6815 Z-score: 7111.2 bits: 1328.3 E(): 0 Smith-Waterman score: 8538; 90.490% identity (96.451% similar) in 1409 aa overlap (36-1444:1-1400) 10 20 30 40 50 60 mKIAA1 LWIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPA :::::::::::::::::::::::::::::: gi|123 MMLSRPKPGESEVDLLRFQSQFLEAGAAPA 10 20 30 70 80 90 100 110 120 mKIAA1 VQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED :::::::::.::: ::.:::::::::::::.::::::::::::.:::::::::::::::: gi|123 VQLVKGSRRRGDAHPDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::::::::.:::::::::::::::::::::::::.::::::::::::::::::::.::: gi|123 PEERLNRHDEHITAVLSKIVERDTSSVTVTLPVPSGVAFPPVFHRSQERQVKPAASSKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV :::::::::::: ::. :::::::: :.::::::::::: .::..:::::::.::::::. gi|123 IFAQEIAARRVSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLI 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE :::::::..: ::::::::::::::::::::::::::::::::::::::::::.:....: gi|123 TGKGLRSQAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRAHNHTRE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP :: :::::.:.:::::: :.::::. :: : : : :::: ::.::::::::: gi|123 QTETKATKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLE--------DKLEDKLQPRTP 280 290 300 310 320 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT ::::::::.:.:::::::::.::::::::::::::::::::::::::::::: ::::::: gi|123 ALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDLPT 330 340 350 360 370 380 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::.:::.:::::::::::::::::: gi|123 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSV 390 400 410 420 430 440 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL ::::::::::::::::::::.::::::::::::.:::::::::::: ::::::::::::. gi|123 LRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVAPGDEELLDSTFSWYHGASVFPM 450 460 470 480 490 500 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV :::.::::::::::::: :::.:::::::::::::::::::::::::::::::.:::::: gi|123 MPSHDDKEDEDEDEELTKEKVNRKTPEEGSRPPPDLARHDVIKGLLATNLLPRFRYVLEV 510 520 530 540 550 560 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY ::::::::::::::::::::::::::::::::::::::::.::::::::::::::.:::: gi|123 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLY 570 580 590 600 610 620 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::.:::::::::::::::::::::.:::::::::::::::.::::: :::::::::: gi|123 KVPCAAAMKLLRVLASAGRNIAARLLSSFDVRSRLCRFIAEAPRDLALPFEEAEILTTEA 630 640 650 660 670 680 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL ::::::::::::::::::::::::.::::::: :::.::::::.:::.:.:.:::::::: gi|123 FRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTHPLQPLSMQRMASLLTLLTQLTL 690 700 710 720 730 740 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV :::. :: .:: .:::: :::::.:::.::::::::::::::::::: ::::::::::: gi|123 AAST-QPEATSGSVESCVVAIPSSITWTHVSGLKPLVEPCLKQTLKFLRRPDVWNALGPV 750 760 770 780 790 800 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL :::::::::::::.::.:: ::::::::::::.::: ::::::::::: .:::::::::: gi|123 PSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLLPLLSQPPLGRMWDSLRDCSPL 810 820 830 840 850 860 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ :::::::::::::::::::::::::::::::::::::::::::::::::: : ::::: : gi|123 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLGQIHKGLCRQ 870 880 890 900 910 920 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :..::::::::.::::::::::::::::::::::.:::::::::::::.:::: :::::: gi|123 LAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYHLQYLVLSLAQKAATSQPEPAA 930 940 950 960 970 980 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS ::::::..:::::::::::::.::.:::::::::: ::::.:::::::::::::::::.: gi|123 STALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLPENASGGPEAADFSDGLSLGNS 990 1000 1010 1020 1030 1040 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :::.:::::::::::::::::::::::::::::::::.::::::::: :::::::::::: gi|123 GDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTSQALYRGELPRVSSLLLPVPKE 1050 1060 1070 1080 1090 1100 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA ::: ::::::::::::::::::::: :::::::..::::::::::::::::.:::::::: gi|123 PLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVLQWVLVLESWRPEALWAVPPAA 1110 1120 1130 1140 1150 1160 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|123 RLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKLDCPLPGLTSFPDLYASF 1170 1180 1190 1200 1210 1220 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|123 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECYT 1230 1240 1250 1260 1270 1280 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM ::::::: ::::::::::::.:.:::::.::::::::::::.::::::::::::.::::: gi|123 EPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVNSFVFCQDPKSSDEVKAARRSM 1290 1300 1310 1320 1330 1340 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::..:::.:. :::::::::::::::::::::: :::::::: ::::::: ::::: :: gi|123 LQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRLRQQYLQTLPTEVLQNGGFKT 1350 1360 1370 1380 1390 1400 >>gi|109080733|ref|XP_001101155.1| PREDICTED: similar to (1393 aa) initn: 6309 init1: 6107 opt: 6117 Z-score: 6382.1 bits: 1193.4 E(): 0 Smith-Waterman score: 7529; 80.356% identity (91.032% similar) in 1405 aa overlap (37-1440:1-1389) 10 20 30 40 50 60 mKIAA1 WIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPAV :::::::::::.:::::::::: ::::::: gi|109 MLSRPKPGESEMDLLRFQSQFLAAGAAPAV 10 20 30 70 80 90 100 110 120 mKIAA1 QLVK-GSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED :::: :.: .:: :: :::::::::::::::::::.:.: :::: :: .:::.::: gi|109 QLVKKGNRGGSDANSDRPTLQDHRDVVMLDNLPDLPPALVPSPPKRARSSPCHPLPEDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS :::.: ::::::::::.::.:::::::::.::.::.:::: :::::.. : : :.::::: gi|109 PEEKLRRHDQHITAVLTKIIERDTSSVTVNLPMPSGVAFPAVFHRSRDTQGKSATSGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV ::::::::::.. :: :. .:::.: ::::: ::::. ::.. :::: ::.:. :::: gi|109 IFAQEIAARRIAEARVPSVGEVVPNLGPPEGAVTCETPTPRDQGCQLPGSSHSFQGPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE ::::::.. ::::.:::::::.:::::: :::::.:::.:::::::::::::::::..:: gi|109 TGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSRTQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP ::: ::...: : ::. ::::.:. :. . ::: ::::: ::: : gi|109 QTGEKASEEQRPGGPSANVTKEKPLMSAFASEPRKGDKLE--PEA--------------P 280 290 300 310 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :: :::::.:.:::::::::.::::::::::::::::::::::::::::::::::::::: gi|109 ALALPMTPQKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT 320 330 340 350 360 370 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::.::.:...:::::::::::.::: gi|109 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSV 380 390 400 410 420 430 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL : ::::::::::::::::::::.:::::.::::.:::::::::::: :::::::: .::: gi|109 LSLLLDAGFLFLLRFSLDDRVDGVIAAAIRALRALLVAPGDEELLDSTFSWYHGALTFPL 440 450 460 470 480 490 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV ::::.:::::::::: .::.:::.::: :::::::::::::::::::.:::::::.::: gi|109 MPSQEDKEDEDEDEECPAEKAKRKSPEEESRPPPDLARHDVIKGLLATSLLPRLRYLLEV 500 510 520 530 540 550 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY : :::.:::::::::::::::::::: ::::::::.::::.:::::::::.:.::::::: gi|109 TYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPLGAGPTPSLY 560 570 580 590 600 610 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::.:::::::::::::::::::::.::.::::::::::::..::::::::: :.::: gi|109 KVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRFIAEAPQELALPPEEAETLSTEA 620 630 640 650 660 670 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL .:::::::::::::::::::::::.::::..: :::.:: :::.:::.:::.:::::::: gi|109 LRLWAVAASYGQGGDLYRELYPVLMRALQVVPQELSTHPPQPLSMQRIAALLTLLTQLTL 680 690 700 710 720 730 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV ::.: : : : ::. . : :: :::::::::.:::::::.::::.: ::..: :.::: gi|109 AAGSTPAEAISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPV 740 750 760 770 780 790 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL : ::::::::::::::.: :::::::::::: .: :::::::: ::.:::::: :::: gi|109 PVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPTLGGLWDSLRHCSPL 800 810 820 830 840 850 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ ::::::: .::: ::::::::.:::: ::.::::::::::::::::.:::.: ::::::: gi|109 CNPLSCAPAPEAPPSLVSLGCSGGCPSLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQ 860 870 880 890 900 910 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :.:.:.:::::.::::::::. ::.:::::::::.::::::::.:.::.:::.:: :: gi|109 LAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQLLPAP 920 930 940 950 960 970 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS .::::..::.::::::::::.::.:::::::::::.::: .::::::::::: :::::: gi|109 HAALHHGMALALLSRLLPGSEHLAHELLLSCVFRLELLPERTSGGPEAADFSDQLSLGSS 980 990 1000 1010 1020 1030 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE : : .:.::.::::::::::::::.:: :::::::.::::.:::: :: .:::::: : gi|109 KVPWCGQGTLLAQACQDLPSIRSCYLTHCLPARASLLASQALHRGELQRVPTLLLPVPME 1040 1050 1060 1070 1080 1090 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA ::: ::::: ::::::::::::::: ::::.:: :::::::::::::..:::::::: gi|109 PLLPTDWPFLPLIHLYHRASDTPSGLSPMDTVGTAMWVLQWVLVLESWRPQALWAVPPAA 1100 1110 1120 1130 1140 1150 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF ::::::::.:::::::::. .:.:::::::.::.::.::::.::::::::::::::::.: gi|109 RLARLMCVFLVDSELFRESRVQHLVAALLAQLCQPQILPNLNLDCPLPGLTSFPDLYANF 1160 1170 1180 1190 1200 1210 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT ::::::::::::::::::::::::::::::::::::::::.::::.:::::::: ::::: gi|109 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYT 1220 1230 1240 1250 1260 1270 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM : ::.: :::::::.::::.:: .:::.::.::::::::::: :::.::::::.::::: gi|109 VPPEDNLALLQLYFRTLVTGALRPHWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSM 1280 1290 1300 1310 1320 1330 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::.::::.::::::::::::::::.:::::::::::: :::. :: : . :::: gi|109 LQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1340 1350 1360 1370 1380 1390 >>gi|114656484|ref|XP_001150221.1| PREDICTED: RNA polyme (1156 aa) initn: 6070 init1: 6070 opt: 6081 Z-score: 6345.6 bits: 1186.4 E(): 0 Smith-Waterman score: 6329; 80.822% identity (91.952% similar) in 1168 aa overlap (273-1440:1-1152) 250 260 270 280 290 300 mKIAA1 NLVTGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQ : :::::.:::.:::::::::::::::::. gi|114 MAPEEILQEQQRLLAQLDPSLVAFLRSHSR 10 20 30 310 320 330 340 350 360 mKIAA1 VQEQTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQP .::::: :...: : ::. ::::::. :. . ::: ::::: ::: gi|114 TQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKGDKLE--PEA------------ 40 50 60 70 370 380 390 400 410 420 mKIAA1 RTPALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVD ::: ::.::.:.:::::::::.::::::::::.:::::::::::::::::::::::.: gi|114 --PALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDAD 80 90 100 110 120 130 430 440 450 460 470 480 mKIAA1 LPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLV ::::::::::::::::::::::::::::::::::::::::.::.:...:::::::::::. gi|114 LPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLA 140 150 160 170 180 190 490 500 510 520 530 540 mKIAA1 GSVLRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASV :::: ::::::::::::::::::::.:::.:.::::.:::::::::::: :::::::: . gi|114 GSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGALT 200 210 220 230 240 250 550 560 570 580 590 600 mKIAA1 FPLMPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYV :::::::.:::::::::: . ..:::.::: :::::::::::::::::::.:::::::: gi|114 FPLMPSQEDKEDEDEDEECPAGNAKRKSPEEESRPPPDLARHDVIKGLLATSLLPRLRYV 260 270 280 290 300 310 610 620 630 640 650 660 mKIAA1 LEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTP :::: :::.:::::::::::::::::::: ::::::::.::::.:::::::::.:.:::: gi|114 LEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPVGAGPTP 320 330 340 350 360 370 670 680 690 700 710 720 mKIAA1 SLYKVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILT ::::::::.:::::::::::::::::::::.::.::::::::::::..:::::::::.:. gi|114 SLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRFIAEAPQELALPPEEAEMLS 380 390 400 410 420 430 730 740 750 760 770 780 mKIAA1 TEAFRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQ :::.::::::::::::: :::::::::.::::..: :::.:: :::.:::.:.:.::::: gi|114 TEALRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQ 440 450 460 470 480 490 790 800 810 820 830 840 mKIAA1 LTLAASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNAL :::::.: : : : ::. . : :: :::::::::.:::::::.::::.: ::..: :. gi|114 LTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAV 500 510 520 530 540 550 850 860 870 880 890 900 mKIAA1 GPVPSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDC :::: ::::::::::::::.: :::::::::::: .: :::::::: ::::::::: : gi|114 GPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPTLGSLWDSLRHC 560 570 580 590 600 610 910 920 930 940 950 960 mKIAA1 SPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGL : :::::::. . :: ::::::::.:::: ::.::::::::::::::::.:::.: :::: gi|114 SLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGL 620 630 640 650 660 670 970 980 990 1000 1010 1020 mKIAA1 CGQLSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPE ::::.:.:.:::::.::::::::. ::.:::::::::.::::::::.:.::.:::.::: gi|114 CGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPL 680 690 700 710 720 730 1030 1040 1050 1060 1070 1080 mKIAA1 PAASTALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSL ::. .::.:..::.::::::::::::..::::::::::::::: .::::::::::: ::: gi|114 PATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGPEAADFSDQLSL 740 750 760 770 780 790 1090 1100 1110 1120 1130 1140 mKIAA1 GSSGDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPV ::: :.: .:.::.::::::::::.:::.::::::::::.::::.:::: :: .::::. gi|114 GSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLLLPM 800 810 820 830 840 850 1150 1160 1170 1180 1190 1200 mKIAA1 PKEPLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVP : :::: ::::: :::.::::::::::: .::.:.::::::::::::::::..::::: gi|114 PMEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLESWRPQALWAVP 860 870 880 890 900 910 1210 1220 1230 1240 1250 1260 mKIAA1 PAARLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLY :::::::::::.:::::::::.:.:.:::::::.::.:::::::.::::::::::::::: gi|114 PAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCPLPGLTSFPDLY 920 930 940 950 960 970 1270 1280 1290 1300 1310 1320 mKIAA1 ASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLE :.:::::::::::::::::::::::::::::::::::::::::.::::.:::::::: :: gi|114 ANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLE 980 990 1000 1010 1020 1030 1330 1340 1350 1360 1370 1380 mKIAA1 CYTEPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTAR ::: : ::.: :::::::.::::.:: ::::.::.::::::::::: :::.::::::.:: gi|114 CYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAAR 1040 1050 1060 1070 1080 1090 1390 1400 1410 1420 1430 1440 mKIAA1 RSMLQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGV :::::.::::.::::::::::::::::.:::::::::::: :::. :: : . :::: gi|114 RSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVS 1100 1110 1120 1130 1140 1150 mKIAA1 KT gi|114 ET >>gi|114656478|ref|XP_510325.2| PREDICTED: RNA polymeras (1393 aa) initn: 6278 init1: 6070 opt: 6081 Z-score: 6344.5 bits: 1186.5 E(): 0 Smith-Waterman score: 7481; 79.786% identity (91.246% similar) in 1405 aa overlap (37-1440:1-1389) 10 20 30 40 50 60 mKIAA1 WIGRVADRLRWVNEREYWKESNKGHSSRAMMLSRPKPGESEVDLLRFQSQFLEAGAAPAV :::::::::::::::.:::::: ::::::: gi|114 MLSRPKPGESEVDLLHFQSQFLAAGAAPAV 10 20 30 70 80 90 100 110 120 mKIAA1 QLVK-GSRRHGDAPPDRLPPQDHRDVVMLDNLPDLPPALLPAPAKRARPSPGRPLPHDED :::: :.: ::: :: : :::::::::::::::::::.:.: ::::::::. ::.::: gi|114 QLVKKGNRGGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDED 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 PEERLNRHDQHITAVLSKIVERDTSSVTVTLPVPSSVAFPPVFHRSQERQVKPAASGKRS ::::: ::::::::::.::.:::::::.:.:::::.:::: :: ::.. : : :.::::: gi|114 PEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRS 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 IFAQEIAARRVSGNRVTSAEQVVPSLDTPEGAVPCETPSVRDRSNQLPGRSHGFHRPNLV ::::::::::.. . :. .:::.. ::::: ::::. :... :::: ::.:. :::: gi|114 IFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQE ::::::.. ::::.:::::::.:::::: :::::.:::.:::::::::::::::::..:: gi|114 TGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSRTQE 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 QTGTKATKKQSPERPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTP ::: :...: : ::. ::::::. :. . ::: ::::: ::: : gi|114 QTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKGDKLE--PEA--------------P 280 290 300 310 370 380 390 400 410 420 mKIAA1 ALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDLPT :: ::.::.:.:::::::::.::::::::::.:::::::::::::::::::::::.:::: gi|114 ALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDADLPT 320 330 340 350 360 370 430 440 450 460 470 480 mKIAA1 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRLVGSV :::::::::::::::::::::::::::::::::::::.::.:...:::::::::::.::: gi|114 HLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSV 380 390 400 410 420 430 490 500 510 520 530 540 mKIAA1 LRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGDEELLDRTFSWYHGASVFPL : ::::::::::::::::::::.:::.:.::::.:::::::::::: :::::::: .::: gi|114 LSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGALTFPL 440 450 460 470 480 490 550 560 570 580 590 600 mKIAA1 MPSQDDKEDEDEDEELTTEKVKRKTPEEGSRPPPDLARHDVIKGLLATNLLPRLRYVLEV ::::.:::::::::: . ..:::.::: :::::::::::::::::::.::::::::::: gi|114 MPSQEDKEDEDEDEECPAGNAKRKSPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEV 500 510 520 530 540 550 610 620 630 640 650 660 mKIAA1 TCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMETIVQEFLPTSWSPIGVGPTPSLY : :::.:::::::::::::::::::: ::::::::.::::.:::::::::.:.::::::: gi|114 TYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLY 560 570 580 590 600 610 670 680 690 700 710 720 mKIAA1 KVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCRFIAEAPHDLALPPEEAEILTTEA :::::.:::::::::::::::::::::.::.::::::::::::..:::::::::.:.::: gi|114 KVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRFIAEAPQELALPPEEAEMLSTEA 620 630 640 650 660 670 730 740 750 760 770 780 mKIAA1 FRLWAVAASYGQGGDLYRELYPVLLRALQTLPTELSAHPLQPLAMQRVAALFTLLTQLTL .::::::::::::: :::::::::.::::..: :::.:: :::.:::.:.:.:::::::: gi|114 LRLWAVAASYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTL 680 690 700 710 720 730 790 800 810 820 830 840 mKIAA1 AASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLKQTLKFLPRPDVWNALGPV ::.: : : : ::. . : :: :::::::::.:::::::.::::.: ::..: :.::: gi|114 AAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPV 740 750 760 770 780 790 850 860 870 880 890 900 mKIAA1 PSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPLGSLWDSLRDCSPL : ::::::::::::::.: :::::::::::: .: :::::::: ::::::::: :: : gi|114 PVACLLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLL 800 810 820 830 840 850 910 920 930 940 950 960 mKIAA1 CNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQSHKGLCGQ ::::::. . :: ::::::::.:::: ::.::::::::::::::::.:::.: ::::::: gi|114 CNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQ 860 870 880 890 900 910 970 980 990 1000 1010 1020 mKIAA1 LSAVLTAPGLQKYFLQCVAPAPAPQLTPFSAWALHHEYHLQYLVLSLAHKAATLQPEPAA :.:.:.:::::.::::::::. ::.:::::::::.::::::::.:.::.:::.::: ::. gi|114 LAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPLPAT 920 930 940 950 960 970 1030 1040 1050 1060 1070 1080 mKIAA1 STALHHAVALVLLSRLLPGSEYLAQELLLSCVFRLEFLPESASGGPEAADFSDGLSLGSS .::.:..::.::::::::::::..::::::::::::::: .::::::::::: :::::: gi|114 HAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSS 980 990 1000 1010 1020 1030 1090 1100 1110 1120 1130 1140 mKIAA1 GDPQCRRGALLVQACQDLPSIRSCYLAHCSPARASLLSSQALYRGELLRVSSLLLPVPKE :.: .:.::.::::::::::.:::.::::::::::.::::.:::: :: .::::.: : gi|114 RVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLLLPMPME 1040 1050 1060 1070 1080 1090 1150 1160 1170 1180 1190 1200 mKIAA1 PLLATDWPFQPLIHLYHRASDTPSGPPAADTVGVAMRVLQWVLVLESWRPEVLWAVPPAA ::: ::::: :::.::::::::::: .::.:.::::::::::::::::..:::::::: gi|114 PLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAA 1100 1110 1120 1130 1140 1150 1210 1220 1230 1240 1250 1260 mKIAA1 RLARLMCVYLVDSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASF ::::::::.:::::::::.:.:.:::::::.::.:::::::.::::::::::::::::.: gi|114 RLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCPLPGLTSFPDLYANF 1160 1170 1180 1190 1200 1210 1270 1280 1290 1300 1310 1320 mKIAA1 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYT ::::::::::::::::::::::::::::::::::::::::.::::.:::::::: ::::: gi|114 LDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYT 1220 1230 1240 1250 1260 1270 1330 1340 1350 1360 1370 1380 mKIAA1 EPAEDSLPLLQLYFRALVTGSLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRSM : ::.: :::::::.::::.:: ::::.::.::::::::::: :::.::::::.::::: gi|114 VPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSM 1280 1290 1300 1310 1320 1330 1390 1400 1410 1420 1430 1440 mKIAA1 LQRTWLLTDEGLRQHLLHYKLPNSSLPEGFELYSQLPRLRQQCLQTLPTEGLQNGGVKT ::.::::.::::::::::::::::.:::::::::::: :::. :: : . :::: gi|114 LQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1340 1350 1360 1370 1380 1390 1444 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 03:22:32 2009 done: Sat Mar 14 03:33:19 2009 Total Scan time: 1385.280 Total Display time: 1.140 Function used was FASTA [version 34.26.5 April 26, 2007]