FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0774.ptfa, 1252 aa
 vs ./tmplib.26680 library

1767765 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 11.0079+/-0.00833; mu= -7.0882+/- 0.553
 mean_var=537.9699+/-130.864, 0's: 0 Z-trim: 7  B-trim: 0 in 0/36
 Lambda= 0.0553

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1288  ( 425 res)   mbg21429                   ( 425)  763   76 1.6e-14


>>mKIAA1288  ( 425 res)   mbg21429                        (425 aa)
 initn: 740 init1: 404 opt: 763  Z-score: 353.3  bits: 76.0 E(): 1.6e-14
Smith-Waterman score: 763;  36.559% identity (38.418% ungapped) in 372 aa overlap (892-1252:61-425)

             870       880       890       900          910        
mKIAA0 QKDPEAKKPAVSSPKRTASAATKPHSPGYPKQRTSAPRN---EFPPKPDLQAREAERQLA
                                     : : . ::.   .    ::. . :   .::
mKIAA1 HVRLTAKGLLRNLRLPSGLRKNTVIFHTVEKGRQKNPRSLCIQTQTAPDVLSSERTLELA
               40        50        60        70        80        90

      920       930       940       950       960       970        
mKIAA0 QRLRDRCEWQARQLGLARRELKKAIQGFDALAVSTKHFFGKSERALAKEKELSIELANIR
       :  . .:: :.  .   :. :...   :.::.:  .:.... :.:: ..: :: ::...:
mKIAA1 QY-KTKCESQSGFILHLRQLLSRGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVSLR
               100       110       120       130       140         

      980       990      1000      1010      1020      1030        
mKIAA0 DEVAFNTAKCEKLQKEKETLERRFEEELRRLGWQQQAEVQELQERLQQQFQAESARLQAE
        :..  .. ::::.: .  :.  ..: ...:. :.:..  ::..::.. . ::  .::. 
mKIAA1 GELVAASSACEKLEKARADLQTAYQEFVQKLNQQHQTDRTELENRLKDLYTAECEKLQSI
     150       160       170       180       190       200         

     1040      1050          1060      1070      1080      1090    
mKIAA0 HQDQLLRMRCQHQEQM----STHEFEKKELEENFEKLRLTLQDQVDTLTFQSQSLRDRAR
       . ..  ... : :::.    ..::.::: ::. ... . .:. :.. :  ....: .: .
mKIAA1 YIEEAEKYKTQLQEQLPEIKKSHEMEKKSLEDLLNEKQESLEKQINDLKSENDALNERLK
     210       220       230       240       250       260         

         1100      1110      1120      1130      1140      1150    
mKIAA0 RFEEALRKTTEEQLEIALAPYQHLEEDMQSLKQVLEMKNQQIHLQEKKIIELEKLVEKNI
         :.  .. ..:. .      ..::....::: :::.::...: :. :....::::..: 
mKIAA1 SEEQ--KQLSREKANSKNPQVMYLEQELESLKAVLEIKNEKLHQQDMKLMKMEKLVDNNT
     270         280       290       300       310       320       

         1160      1170      1180      1190      1200      1210    
mKIAA0 ILEERIQVLQQQNEDLKARIDQNTVVTRQLSEENANLQEYVEKETQEKKRLSRTNEELLW
        : .... .::.::.::::.:.. ...:::: :.: ::: .:::.. .::::  ::::::
mKIAA1 ALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAALQESLEKESKVNKRLSMENEELLW
       330       340       350       360       370       380       

         1220      1230         1240       1250  
mKIAA0 KLQTGDPTSPIKLSPTS---PVYRGSSSGP-SSPARVSTTPR
       ::..::  :: : ::::   :     .::  :::   : .::
mKIAA1 KLHNGDLCSP-KRSPTSSAIPFQSPRNSGSFSSP---SISPR
       390        400       410       420        




1252 residues in 1 query   sequences
1767765 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:28:21 2006 done: Mon Mar 27 10:28:22 2006
 Scan time:  1.220 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]