FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1116.ptfa, 1362 aa vs ./tmplib.26680 library 1767655 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.2824+/-0.00995; mu= -14.9498+/- 0.657 mean_var=604.4677+/-147.153, 0's: 0 Z-trim: 11 B-trim: 0 in 0/36 Lambda= 0.0522 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1172 ( 1200 res) mfj66157 (1200) 1249 110 2.6e-24 >>mKIAA1172 ( 1200 res) mfj66157 (1200 aa) initn: 1759 init1: 1011 opt: 1249 Z-score: 528.7 bits: 110.0 E(): 2.6e-24 Smith-Waterman score: 2346; 37.155% identity (49.709% ungapped) in 1378 aa overlap (94-1325:17-1192) 70 80 90 100 110 120 mKIAA1 RPPGPVARLSARIAPGRRLFLRRAPGLCADNMEAVKTFNSELYSLNDYKPPISKAKMTQI ::.::..::.::.:: :.:::::.::: : mKIAA1 VTGGPGAAAAAAATRANMDAVNAFNQELFSLMDMKPPISRAKMILI 10 20 30 40 130 140 150 160 170 180 mKIAA1 TKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFS :::::::::.:::::: :::::.:::::::::::::::::::::::::: .::::.:::: mKIAA1 TKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFS 50 60 70 80 90 100 190 200 210 220 230 240 mKIAA1 NNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLAS .:: .::: :: ::..:::::::::::::::.::: :::::::::::: ..:: . mKIAA1 KNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSN--AAPVAEN 110 120 130 140 150 160 250 260 270 280 290 300 mKIAA1 TTAAMSNTPGTPVTPVTPANVVQGLPD---PWVSQIANTDTLAAVAQILQSPQGQQLQQL .: :. :.: :: .. . : : :.:. ..:..:::::..:. :::::::. mKIAA1 VT----NNEGSPPPPVKISSELAQAPTNSMPTVAQLPSSDAFAAVAQLFQTTQGQQLQQI 170 180 190 200 210 220 310 320 330 340 350 360 mKIAA1 IQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLDQGVSFNKKLMDR .::.: : :::. :::.....:.::.:::: .: . : .: ..:.:::.:: mKIAA1 LQTFQ---QPPQPQS-PALDSAVMAQVQAITAQLKTAPTQ-----PPEQKTAFDKKLLDR 230 240 250 260 270 370 380 390 mKIAA1 FDFGEDSEHSEESKKE----------------MPT----------PQLSHVSESVNNSIF ::. .. : :.:::: :: : : .: .. : mKIAA1 FDYDDEPEAVEDSKKEDAAAISTAALATAAPPAPTAATPAVATAVPVPSATSPPPPQTPF 280 290 300 310 320 330 400 410 mKIAA1 HQIAEQLQQ------QNLEQLRQQLLEQQQ------------------------------ .. .:: :...:.. ... :: mKIAA1 GYPGDGVQQPACTQHQSMDQFQPRMMPIQQDTMHHQVPLPPNGQMPGFGLLSAPPPFPPM 340 350 360 370 380 390 420 430 440 450 mKIAA1 PQKVTPQD--SQEGTF------------GSEHSASPSQGSSQQHFLEP------------ :: :: .: : : . . :. : .: . .: mKIAA1 PQPGMPQPGMAQPGLAQPGMAQPTMPQPGMPQPGMPQPGMAQPGLAQPGMAQPGMPQPAM 400 410 420 430 440 450 460 470 480 490 mKIAA1 -----------EANLDDSIDIQ---------QQDMDIDEGQDVVEEEIFEPEAKKVAVRS . ... . .: :.. .. .. :: :. .: . .: . mKIAA1 PQPAMPQPGMAQPGVSPAPPVQPTFQSTFQPQNEPHSQKPHQQVEMEVEQPCVTEV---K 460 470 480 490 500 500 510 520 530 540 550 mKIAA1 RSRTHSR-SRSRSPRKRRSRSRSGSRKRKHRKRSRSHSREKKRKASRSYSSERRAREREK : .:: ::::::..::::: : ::. .:: ::::.::...:.. :: :.::: ::.:. mKIAA1 RHVPESRKSRSRSPKRRRSRSGSRSRRSRHR-RSRSRSRDRRRHSPRSRSQERRDREKER 510 520 530 540 550 560 560 570 580 590 600 610 mKIAA1 ERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYV ::..:::: ..:.: :::::::::::.::..::::...:.:::: ::::::::::::::. mKIAA1 ERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYI 570 580 590 600 610 620 620 630 640 650 660 670 mKIAA1 CMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVK ::::::..::::::: :.::...: ::::::::::.:..:::.:::.::::::::.::: mKIAA1 VMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVK 630 640 650 660 670 680 680 690 700 710 mKIAA1 VDDLDGFAEGGMIDQETVNAEWETV--KASEPVK----------EPVQTAQSPAPVEKES ...:..: ::::.:..:.: .:. . : .. : :::. .:.:: mKIAA1 AEELESFCEGGMLDSDTLNPDWKGIPKKPDNEVAQNGGAETSHTEPVSPIPKPVPVPVPP 690 700 710 720 730 740 720 730 740 750 760 770 mKIAA1 VVTTQAEVFPPPVAMLQIPV-APAVPAV-SLVPPAFPVSMPVPPPGFN-----PIPPPPF . . . ::: :.: :. :.: .: :::: . .:::::. : ::::: mKIAA1 IPVPAPITVPPP----QVPPHQPGPPVVGALQPPAFTPPLGMPPPGFGPGVPPPPPPPPF 750 760 770 780 790 800 780 790 800 810 820 830 mKIAA1 LRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTPEAVKDVGFGSLVLP :: .::: . ::::.:: :::..:: .::: : . ::.:. :. :. . .. mKIAA1 LRPGFNPMHLPPGFLPPGPPPPITPPVSIPP--PHT---PPISI-PNLVSGARGNAESGD 810 820 830 840 850 840 850 860 870 880 890 mKIAA1 SGSVAGSLAPSTLPAGNVFNPPSKAEPEEKVPHLIEHQIPSGENTRPVIPSDIPSSAAML :... :: .: :. :...:. mKIAA1 SAKMYGSAGP------------------------------------PAAPTSLPT----- 860 870 900 910 920 930 940 950 mKIAA1 AQPPGASSTSGILCVQRPNVSSNSEILGVRPANVSNSAAIMGAQPPNILNNSGILAIQPP :: :.. ....:.: mKIAA1 --PP-----------------------------VTQPVSLLGTQ---------------- 880 960 970 980 990 1000 1010 mKIAA1 NVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTSPAGLLGTQPPIGPQNLPPLAIPAQRMPA :: : : ..::: :.. ::::..: . :: :: :. mKIAA1 ---------GVAPG--P----VIGLQAPST----GLLGARPGL---------IPLQRPPG 890 900 910 920 1020 1030 1040 1050 1060 mKIAA1 LPMLDIRPGLIAQAPGPRFPLLQP-GIPP---QRGIPPPSVLDAALHPPP--RGPFPPGD .: : : :::.. : .:: .:: :::. :. :: .::::: mKIAA1 MPP----PHL------QRFPMMPPRPMPPHMMHRG-PPPGPGGFAMPPPHGMKGPFPPHG 930 940 950 960 970 1070 1080 1090 1100 1110 1120 mKIAA1 LFSQPERPFLAPG-RPSIDNVPNPDKRIPLGNDNIQQEGDRDYRFPPIETREGITRPPQV ::. :: :.. . :.: :. ::. ... :: . .. .: : mKIAA1 -------PFVRPGGMPGLGG-PGPGPGASEDRDGRQQQPQQQ---PPPQQQQQQQQPQQ- 980 990 1000 1010 1130 1140 1150 1160 1170 1180 mKIAA1 DVRDVVGRRLDPREGPGRPPLDARDHFGRPPVDMRENLVRPSLDHLGRRDHFGFPPEKPW :...:.. : :... :: ..: : : ... ...:: .. . mKIAA1 ----------PPQQSPSQQPAPAQQQ---PP-QFR-NDSRQQFNSGRDQERFG---RRSF 1020 1030 1040 1050 1060 1190 1200 1210 1220 1230 1240 mKIAA1 GPRDFDEREHRVLPVFGGPKGLHEERGRFRAGNYRFDPRSGPWNRGFGQEVHRDFDD--R : : ..::. .:. . ... .: : : : .: .. :::... : mKIAA1 GSRVENDRER-----YGSRNDDRDNSNRER----REWGRRSP-----DRDRHRDLEERSR 1070 1080 1090 1100 1250 1260 1270 1280 1290 mKIAA1 RRPWERQRDRDDRDFDFCREINGNRLGRDRIQ-----NTWVPPPHARVFDYFEGATSQRK : .:.::::.:: . :: . :: . .. : : :: ..: .. .. : mKIAA1 RSSGHRDRDRDSRDRESRREKEENRKEKHEVADRAGGNKAVEPPLSQV-GTIDTVSELNK 1110 1120 1130 1140 1150 1160 1300 1310 1320 1330 1340 1350 mKIAA1 GDNVPQV-NGENTERHAQPPPLPVQKDPELYEKLASSGDVDKEESGTVAGVESEAVVEST :. . : . :.. .: : : .::: mKIAA1 GEAMATVVKPEESPAEATSPVGP-EKDPGSAAEPPR 1170 1180 1190 1200 1362 residues in 1 query sequences 1767655 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:36:33 2006 done: Mon Mar 27 10:36:34 2006 Scan time: 1.180 Display time: 0.160 Function used was FASTA [version 3.4t11 Apr 17, 2002]