FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0887.ptfa, 429 aa
 vs ./tmplib.26680 library

1768588 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.3187+/-0.00598; mu= 10.1598+/- 0.396
 mean_var=231.1451+/-54.068, 0's: 0 Z-trim: 6  B-trim: 0 in 0/36
 Lambda= 0.0844

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4154  ( 702 res)   mpj02503                   ( 702)  243   42 0.00012


>>mKIAA4154  ( 702 res)   mpj02503                        (702 aa)
 initn: 466 init1: 115 opt: 243  Z-score: 175.9  bits: 42.3 E(): 0.00012
Smith-Waterman score: 460;  29.014% identity (32.803% ungapped) in 355 aa overlap (96-424:360-699)

          70        80        90       100       110         120   
mKIAA0 VVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRFIRPDPR-SRVTDPVGD-IVSF
                                     ..: .:   .: .:   . ..  :: ...:
mKIAA4 SEEQSTDVHMVSDSDGDDFEDASEFGVDDGEVFGMASSTLRKSPMMPENAENEGDALLQF
     330       340       350       360       370       380         

           130       140       150           160       170         
mKIAA0 MHSFEEKYGRAHPVFYQGTYSQALNDA----KRELRFLLVYLHGDDHQDSDEFCRNALCA
          :  .::  ::::. :.   :...:     :. ..: .::: :.   .. :: . :::
mKIAA4 TAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCA
     390       400       410       420       430       440         

     180       190           200                210          220   
mKIAA0 PEVISLINSRMLFWA----CSTNKPE---------GYRVSQALR---ENTYPFLAMIMLK
         ..: ... .. ::     .::. .         :  ..:..:    . .:.. .:: :
mKIAA4 ESIVSYLSQNFITWAWDLTKDTNRARFLTMCNRHFGSVIAQTIRTQKTDQFPLFLIIMGK
     450       460       470       480       490       500         

           230       240       250          260       270       280
mKIAA0 DRRMTVVGRLEGLIQPDDLINQLTFIMD---ANQTYLVSERLEREERNQTQVLRQQQDEA
            :.. ..:    :.:. .:   :.   :.:   .... ::: :..   ....::::
mKIAA4 RSSNEVLNVIQGNTTVDELMMRLMAAMEIFSAQQQEDIKDEDEREAREN---VKREQDEA
     510       520       530       540       550          560      

              290       300       310       320       330       340
mKIAA0 YLASLRADQEKERKKREEKERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSP
       :  ::.::    : ::: .::.  .. ...: .  .:..:. ..   :   . :::::. 
mKIAA4 YRLSLEAD----RAKREAHEREMAEQFRLEQIRKEQEEEREAIRLSLE---QALPPEPKE
        570           580       590       600       610            

               350       360       370       380       390         
mKIAA0 DDPESV-KIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCV
       .. : : :. .. :.   .::::  :..: .. ::. :     ..:.. ..:::: .  .
mKIAA4 ENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEFKLLSTFPRRDVTQL
     620       630       640       650       660       670         

     400       410       420         
mKIAA0 PSEEWPNPPTLQEAGLSHTEVLFVQDLTDE
            ::  .: :..:   :.::.:     
mKIAA4 D----PNK-SLLEVNLFPQETLFLQAKE  
     680            690       700    




429 residues in 1 query   sequences
1768588 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:31:13 2006 done: Mon Mar 27 10:31:13 2006
 Scan time:  0.610 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]