FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1545.ptfa, 488 aa vs ./tmplib.26680 library 1768529 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.8090+/-0.00645; mu= 3.4555+/- 0.428 mean_var=238.0307+/-59.029, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0831 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0442 ( 414 res) mpk01952 ( 414) 218 39 0.0011 >>mKIAA0442 ( 414 res) mpk01952 (414 aa) initn: 425 init1: 147 opt: 218 Z-score: 158.6 bits: 38.5 E(): 0.0011 Smith-Waterman score: 296; 30.872% identity (49.462% ungapped) in 447 aa overlap (174-488:4-414) 150 160 170 180 190 200 mKIAA1 GSSIFAPKEGTALLGLPSPHDAWNRLHRVPPSFPTPPPWPKPVDTERLSALTNHDR---E :: :.: : : :: ::: .:.: . mKIAA0 KRHPSHPSPAP-PVPV-----SAL-GHNRSSTD 10 20 210 220 230 240 250 mKIAA1 PD-KGQ---EEHERDL-LEKTRLLSHGSPVAPVGHPISSLLQRGSGELSRPGVLTEREAE : .:. : .:.: :: : .: :: :: . :: : mKIAA0 PTTRGHLNTEAREKDKPKEKER--DH------------------SG--SRKDLTTE---E 30 40 50 60 260 270 280 290 300 mKIAA1 TRVKESHSPSKE----DG------AKLAARPPSPYCKAALGDCLRLAGLLGRES----GK ..:::: : .. .: : .: :::: .. : : . .::. :. mKIAA0 HKAKESHLPERDGHSHEGRAAGEEPKQLSRVPSPYVRTPGVDSTRPNSTSSREAEPRKGE 70 80 90 100 110 120 310 320 330 mKIAA1 QTPDRPQ--GDVKVKEERRED-----ETPDL------------TGVSVHS---------- . . :. ..:::::::.:: :.:. ...::: mKIAA0 PAYENPKKNAEVKVKEERKEDHDLPTEAPQAHRTSEAPPPSSSASASVHPGPLASMPMTV 130 140 150 160 170 180 340 350 360 mKIAA1 --TATH-----------------MGLGTA---------GFVWDP---P-RDTYRGLELPR :. : :::. .: ::: : :: :: :.. : mKIAA0 GVTGIHAMNSIGSLDRTRMVTPFMGLSPIPGGERFPYPSFHWDPMRDPLRDPYRDLDMHR 190 200 210 220 230 240 370 380 390 mKIAA1 RS-------FPAPP--PAAGPSPFELSERAYRDREPHDYS-------------PERLQE- :. . : . : .: ..:..::::::::: :.: .: mKIAA0 RDPLGRDFLLRNDPLHRLSTPRLYE-ADRSFRDREPHDYSHHHHHHHHPLAVDPRREHER 250 260 270 280 290 300 400 410 420 430 mKIAA1 -----------VRREELERARVPDSDAAAL-------------LPAVHYPRLAPGALH-G : ::. :. :. :.: ::..::::..: : : . mKIAA0 GGHLDERERLHVLREDYEHPRLHPVHPASLDGHLPHPSLLTPGLPSMHYPRISPTAGHQN 310 320 330 340 350 360 440 450 460 470 480 mKIAA1 ALLARTPPAAAVLGAPPPLV-TAGGVPTPPAHPRTTLGPGEAREYSPACNPPEVEAR .:: .:::.:: :.:::::. : :: : : ::: .: :: :. . ..::: mKIAA0 GLLNKTPPTAA-LSAPPPLISTLGGRPGSPR--RTTPLSAEIRERPPSHTLKDIEAR 370 380 390 400 410 488 residues in 1 query sequences 1768529 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:47:47 2006 done: Mon Mar 27 10:47:48 2006 Scan time: 0.720 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]