FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1370.ptfa, 1099 aa
 vs ./tmplib.26680 library

1767918 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.0991+/-0.00542; mu= 12.4327+/- 0.363
 mean_var=132.7702+/-30.012, 0's: 0 Z-trim: 2  B-trim: 4 in 1/35
 Lambda= 0.1113

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1539  ( 231 res)   mie30018                   ( 231)  815  142 7.8e-35


>>mKIAA1539  ( 231 res)   mie30018                        (231 aa)
 initn: 818 init1: 570 opt: 815  Z-score: 717.7  bits: 142.3 E(): 7.8e-35
Smith-Waterman score: 815;  53.219% identity (55.605% ungapped) in 233 aa overlap (865-1097:7-229)

          840       850       860       870       880       890    
mKIAA1 QTGLPLLSSPVPQRKTQSGCFDLDASLLHLRSLSSKSSRPCLNIDEDPDVHEKPFLSSSA
                                     : :. .: :   .. . : .   :  :   
mKIAA1                         RRLKGARRLKLSSLR---TLRKGPGLLSPPSASPFP
                                       10           20        30   

          900       910       920       930       940       950    
mKIAA1 PPITSLSLLGNFEESVLNYRLDPLGIVDGFTAEVGASGTFCPTHLTLPVEVSFYSVSDDN
        : .: .::::::::.:  :. : : ..:::::.::::..:: :.:::: :.:..::..:
mKIAA1 TPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQN
            40        50        60        70        80        90   

          960       970       980       990      1000      1010    
mKIAA1 APSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVVYDLRGMPANHQTFLR
       ::.:..::. :  ::..:: ::  :::::::::::.::::::.:..:.  ::: :.::::
mKIAA1 APAPFLGVVDLTPLGRKGYSVPKVGTIQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLR
           100       110       120       130       140       150   

         1020      1030      1040      1050      1060      1070    
mKIAA1 QRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSME
       .: : ::: .:        :.. : .:: ::.::::.::.::.. :: :.::::::.:.:
mKIAA1 HRLFLVPVGEEG-------NASPTHRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLE
           160              170       180       190       200      

         1080      1090         
mKIAA1 VDSGAAYELKSYTESPTNPQFSPRC
       .:.:  :::.. ::.: ::..::  
mKIAA1 LDTGLPYELQAVTEAPHNPRYSPLP
        210       220       230 




1099 residues in 1 query   sequences
1767918 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:42:36 2006 done: Mon Mar 27 10:42:38 2006
 Scan time:  1.120 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]