FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0802.ptfa, 532 aa
 vs ./tmplib.26680 library

1768485 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.6739+/-0.00639; mu= 2.8569+/- 0.426
 mean_var=207.9295+/-48.683, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0889

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0889  ( 830 res)   mbg02055                   ( 830)  476   74 6.3e-14


>>mKIAA0889  ( 830 res)   mbg02055                        (830 aa)
 initn: 702 init1: 362 opt: 476  Z-score: 342.4  bits: 73.7 E(): 6.3e-14
Smith-Waterman score: 744;  32.948% identity (38.514% ungapped) in 519 aa overlap (5-515:331-782)

                                         10        20        30    
mKIAA0                           RKGNLQRAVSVSCMSEFQRLMDVSPFLPEKGLPS
                                     :.:. ::: ::::. :.: ::.:      .
mKIAA0 EKQDNSWKEARSEKTHDKEGVSEAELGGTGLKRTKSVSSMSEFESLLDCSPYL------A
              310       320       330       340       350          

           40        50        60        70        80        90    
mKIAA0 AGSKEDVTPPLSPDDLKYIEEFHSNDWDYASPRAEADRPPDPWADRTEMGRVGHEATTEP
       .:. ..   : .:  . ..                . .: .:  :  :  ..:   .:. 
mKIAA0 GGDARNKKLPNGPA-FAFV----------------STEPVEPEKDAKE--KAG--LSTRD
          360        370                       380           390   

          100       110       120       130       140        150   
mKIAA0 CPDPSWYLTTSVTMTTDTMTSPEHCQKQPLRTHVLTEQSGVHVLHSPPAIRRVD-SIASG
       :                ...  :   .:  :...  ...:..: .:::. ::.   ..  
mKIAA0 CSH------------IGSLACQEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHD
                       400       410       420       430       440 

           160       170       180       190       200       210   
mKIAA0 GEGRSRADPEGPFPMSRARGNLADAKGGHPEPVLNRWPCTPPRHPRDCVEGSLRPLDRPI
        ::.   .: : : .. :. . .    :  :   .:: :.  :.  :   :.    . : 
mKIAA0 KEGKILIEP-G-FLFTTAKPKESAEADGLAESSYSRWLCNFSRQRLDGGSGASTSGSGPA
             450         460       470       480       490         

           220       230       240       250       260       270   
mKIAA0 CPSLGFASPLNSLDMSKNMSDDMKEVAFSVRNAICAGPAEPHVRDMACQTNGSRTAGTQT
        :.:      ....:: ::::::::..  ::.:. .:  : .:.. . :: :  :.::::
mKIAA0 FPAL------HDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKNTSSQTVGVATVGTQT
     500             510       520       530       540       550   

           280       290       300       310       320       330   
mKIAA0 IQTISVGLQTEALRASGVTSSPHKCLTPKAGGGTTPVSSPSRSLRSRQVAPAIEKVQAKF
       :.:.::::::.  :.:  ..:             .: ::   :.::.:.. ...::....
mKIAA0 IRTVSVGLQTDPPRSSLHSKS------------WSPRSSSLVSVRSKQISSSLDKVHSRI
           560       570                   580       590       600 

           340       350       360       370       380       390   
mKIAA0 ERTCCSPKYGSPKLQRKPLSKADQPNSRTSPGIPQKGFSESAWARSTTTRESPVHTTIND
       :: :::::::::::::. .:: :. ..:.  .. :   . ::::::::::.:::  .:::
mKIAA0 ERPCCSPKYGSPKLQRRSVSKLDSTKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNIND
             610       620       630       640       650       660 

           400           410       420       430       440         
mKIAA0 GLSSLFNIIDHS----PIGVRAGSRSRSAEPRQELGPGQETGTSSRGRSPSPLGVGSETF
       ::::::....::     .   . :..:.     . :  ::   .  ::.:::  ...:  
mKIAA0 GLSSLFSVVEHSGSTESVWKLGMSEARTKPEPPKYGIVQEFFRNVCGRAPSPTTAAGE--
             670       680       690       700       710           

     450       460       470       480       490          500      
mKIAA0 REEGGESTPVRQDLSAPPGYTLTENVARILNKKLLEHALKEERKQ---ASHGSSGLTSDS
            ::    . :: : .:   :.:.::::::  . . .:: .    .. :..:.  :.
mKIAA0 -----ESCKKPEPLS-PASYHQPEGVSRILNKKAAKAGGSEEVRPTMLSQVGKDGILRDG
          720        730       740       750       760       770   

        510       520       530                                 
mKIAA0 HTGEPVPAEPGSMENQTVLLTAPWGL                               
         .  .:.:                                                
mKIAA0 DGSLILPSEDAVCDCSAQSLASCFIRPSRNTIRHSPSKCRLHPSESGWGGEERAAPQ
           780       790       800       810       820       830




532 residues in 1 query   sequences
1768485 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:28:58 2006 done: Mon Mar 27 10:28:59 2006
 Scan time:  0.730 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]