FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1705.ptfa, 562 aa
 vs ./tmplib.26680 library

1768455 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.9429+/-0.0047; mu= 9.6956+/- 0.313
 mean_var=114.4712+/-26.839, 0's: 0 Z-trim: 2  B-trim: 2 in 1/35
 Lambda= 0.1199

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1457  ( 1364 res)   mbg15126                  (1364)  238   52 2.7e-07


>>mKIAA1457  ( 1364 res)   mbg15126                       (1364 aa)
 initn: 209 init1: 132 opt: 238  Z-score: 223.3  bits: 52.4 E(): 2.7e-07
Smith-Waterman score: 238;  26.538% identity (28.395% ungapped) in 260 aa overlap (303-553:732-983)

            280       290       300       310       320        330 
mKIAA1 LYITKRRLREIEDRLHGLKAPSISQTPALKFKVENFFCMGSPLAVFLALRG-IRPGNSGS
                                     :.. ..: .: ::.. ::::  . :    :
mKIAA1 HASVLRNEPSSRRSSSSTMLDGAGALGKFDFEIADLFLFGCPLGLVLALRKTVIP----S
             710       720       730       740       750           

             340       350       360       370       380       390 
mKIAA1 QDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQIHWYNTSNPLPYEHMKPN
        : .  :  :... :.:::.:: : :::::. ... .. : .:  :.     :      .
mKIAA1 LDVFQLRPACQQVYNLFHPADPSASRLEPLLERRFHSLPPFSIPRYQR---YPLGDGCST
       760       770       780       790       800          810    

             400       410       420         430         440       
mKIAA1 FLNPAKEPTSVSDSENIAAIPSPVTSPVLS--RRHYGESITN--IGKASILGAASIG-KG
       .:  . .  ..  .:. ::  :: :.:.    ::    ::..   : :    :.::. ::
mKIAA1 LLADVLQTHNTVFQEH-AAPSSPGTAPAGRGFRRASEISIASQVSGMAESYTASSIAQKG
          820       830        840       850       860       870   

        450       460       470       480       490       500      
mKIAA1 LGGMLFSRFGRSSASQPSEPSKDSLEDDKKPSASPSTTTVATQTLPHSGSGFLDSALELE
        ...  .   :  .     : . . .  .  . . : .   .  ::    : . .    .
mKIAA1 PSSLNHTPSIRRLSLLALPPPSPTTQGPRARARQVSPNLERAPCLPDLDIGEVAAKWWGQ
           880       890       900       910       920       930   

        510       520          530       540       550       560   
mKIAA1 HRIDFELREGLVESRYWSAVTSH---TAYWSSLDVALFLLTFMYKHEHDTEAKPSLGSL 
       .:::. :    . . . ...  :   ..:: : ::. :::  ...:. ..          
mKIAA1 KRIDYALYCPDALTAFPTVALPHLFHASYWESTDVVSFLLRQVMRHDSSSILELDGKEVS
           940       950       960       970       980       990   

mKIAA1 VFTPSQPRERWQRKRTHVKLRNVAANHRINDAVANEDGPQVVTGRFMYGPLDMVTLTGEK
          1000      1010      1020      1030      1040      1050   




562 residues in 1 query   sequences
1768455 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:20 2006 done: Mon Mar 27 10:51:20 2006
 Scan time:  0.780 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]