FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0235.ptfa, 969 aa vs ./tmplib.26680 library 1768048 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.1590+/-0.00638; mu= 9.6536+/- 0.424 mean_var=284.1603+/-67.128, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.0761 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0099 ( 1218 res) mbg05872 (1218) 2561 295 2.9e-80 >>mKIAA0099 ( 1218 res) mbg05872 (1218 aa) initn: 3301 init1: 1469 opt: 2561 Z-score: 1533.3 bits: 295.5 E(): 2.9e-80 Smith-Waterman score: 4731; 71.887% identity (79.874% ungapped) in 1060 aa overlap (1-969:174-1218) 10 20 30 mKIAA0 QLLPTKKFWEPDDSTKDGQKGIFLGDDEWR :::: ::::: :.:.::: ::::::: .:: mKIAA0 NIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWETDESSKDGPKGIFLGD-QWR 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA0 ETAWGTSHHSMSQPIMVQRRSGQSFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADK ..::::: ::.::::::::: ::::: :::::..:::::::::::::::::::::::.: mKIAA0 DSAWGTSDHSVSQPIMVQRRPGQSFHVNSEVNSVLSPRSESGGLGVSMVEYVLSSSPGD- 210 220 230 240 250 260 100 110 120 130 140 mKIAA0 LDSRFRKGTFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQD-DEDSKINGRGLPNGMD : .::: :: :::..: .::..:.:.. :. :. :::.. : .: :: . ::.: mKIAA0 --SCLRKGGFGPRDADSDENDKGEKKNKGT-FDGDKLGDLKEEGDVMDKTNGLPVQNGID 270 280 290 300 310 150 160 170 180 190 200 mKIAA0 ADCKDFNRTPGSRQASPTEVVERLGPSTNPPEGLGPLPNPTANKPLVEEFSNPETQN--L :: :::.::::. : : .:: . :::. : :::. : . .. :: ::.::: :.:. : mKIAA0 ADVKDFSRTPGNCQNSANEV-DLLGPNQNGSEGLAQLTSTNGAKP-VEDFSNMESQSVPL 320 330 340 350 360 370 210 220 230 240 250 260 mKIAA0 DAMDQVGLDSLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQRTSALTVQQLTAAQQQQY : :..::.. ::::: :.:::.::..::::::::::::::::: .::.:::::::::::: mKIAA0 DPMEHVGMEPLQFDYSGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQY 380 390 400 410 420 430 270 280 290 300 310 320 mKIAA0 ALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQ :::::.:::::: ::::::::::::::::::::::::: :::::::: :::::: : mKIAA0 ALAAAHQPHIAG-----LAPAAFVPNPYIISAAPPGTDPYTA-GLAAAATL-GPAVVPHQ 440 450 460 470 480 330 340 350 360 370 380 mKIAA0 YYGV-PWGVYPANLFQQQAAAA--ASNTANQQAASQAQPGQQQVLRPGAGQRPITPSQGQ :::: :::::::.::::::::: :.:.:.::.: ::: ::::::: ::.:::.::.:.: mKIAA0 YYGVTPWGVYPASLFQQQAAAAAAATNSATQQSAPQAQQGQQQVLRGGASQRPLTPNQNQ 490 500 510 520 530 540 390 400 410 420 430 440 mKIAA0 QGQQAESL--AAAANPTLAFGQSLAAGMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPV ::::.. : :::.: .:::::.:::::::: ::::.:::::::::::. :::.:::::: mKIAA0 QGQQTDPLVAAAAVNSALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGARNGLGAPV 550 560 570 580 590 600 450 460 470 480 490 500 mKIAA0 RLIAPTPVLISSTAAQAA--AAAAAAGGTANSLTGSTNGLFRPIGTQPPQQQQQQQQPST ::.::.::.:::.::::: ::::.:.:.:..:.:.::: :::.::: :: : ::: ::. mKIAA0 RLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQ-PSN 610 620 630 640 650 660 510 520 530 540 550 mKIAA0 NLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSASLGFGSGSSLGAAIGSALSGFGSS--- :: :.::::..::...::::::::.: .::...::::::.:::::..::::.:::.. mKIAA0 NLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 670 680 690 700 710 720 mKIAA0 ------------------------------------------------------------ mKIAA0 SNTGSGSRRDSLTGSSDLYKRTSSSLAPIGHSFYSSLSYSSSPGPVGMPLPSQGPGHSQT 730 740 750 760 770 780 560 570 580 590 600 mKIAA0 ----------------GGLTNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLR ::::::::::::::::::::::::::.::::: :: :: :::: mKIAA0 PPPSLSSHGSSSSLNLGGLTNGSGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLR 790 800 810 820 830 840 610 620 630 640 650 660 mKIAA0 YNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAER :. ::.::::::::::::::::.::::::.. :::.::::::::::::: :::::: ::: mKIAA0 YGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAER 850 860 870 880 890 900 670 680 690 700 710 720 mKIAA0 QIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVI :.:::::::::::::.:::::::::::::::: .:::::: ::::::: ::::::::::: mKIAA0 QLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVI 910 920 930 940 950 960 730 740 750 760 770 mKIAA0 QKALESISSDQQ--SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQ ::::: : :::: .:::.::::::::::::::::::::::::::::::::::::::::: mKIAA0 QKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQ 970 980 990 1000 1010 1020 780 790 800 810 820 830 mKIAA0 VFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPE ::.:::::::::::::::::: .:::::::::::::::::::::::::::::::::::: mKIAA0 VFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPE 1030 1040 1050 1060 1070 1080 840 850 860 870 880 890 mKIAA0 DKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMM ::::::.::::.::.::::::::::::::::::::.:::.:::::: .:::::::::::: mKIAA0 DKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMM 1090 1100 1110 1120 1130 1140 900 910 920 930 940 950 mKIAA0 KDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLG ::::::::::::::.:::.::::.::::::::.:::::::::::::::::::.::. ::: mKIAA0 KDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNGVDLG 1150 1160 1170 1180 1190 1200 960 mKIAA0 PIGGPPNGML :: :::::.. mKIAA0 PICGPPNGII 1210 969 residues in 1 query sequences 1768048 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:15:26 2006 done: Mon Mar 27 10:15:27 2006 Scan time: 1.030 Display time: 0.110 Function used was FASTA [version 3.4t11 Apr 17, 2002]