FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0678.ptfa, 966 aa
 vs ./tmplib.26680 library

1768051 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9603+/-0.00428; mu= 14.6989+/- 0.287
 mean_var=82.2265+/-18.684, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1414

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00095  ( 200 res)   mfj57291                   ( 200)  131   37  0.0036


>>mFLJ00095  ( 200 res)   mfj57291                        (200 aa)
 initn: 105 init1:  75 opt: 131  Z-score: 149.3  bits: 36.8 E(): 0.0036
Smith-Waterman score: 131;  43.077% identity (48.276% ungapped) in 65 aa overlap (21-82:14-74)

               10        20        30        40        50        60
mKIAA0 LLKDSLDAWKKEVEKKPPMMSIDDAYEVLNLPIGQGLHDESKIRKAYFRLAQKYHPDKNP
                           : .. :.::.:  .    :   :.:.: .:: ::::::::
mFLJ00        PNMADQRQRSLSTSGESLYHVLGLDKNATSDD---IKKSYRKLALKYHPDKNP
                      10        20        30           40        50

                  70        80        90       100       110       
mKIAA0 ---EGRDMFEKVNKAYEFLCTKSTKIVDGPDPENIILILKTQSILFNRHKEELQPYKYAG
          :. : :...:.:. .: : .::                                   
mFLJ00 DNPEAADKFKEINNAHAIL-TDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAK
               60         70        80        90       100         




966 residues in 1 query   sequences
1768051 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:26:03 2006 done: Mon Mar 27 10:26:04 2006
 Scan time:  0.980 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]