FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1823.ptfa, 376 aa vs ./tmplib.26680 library 1768641 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.1569+/-0.00491; mu= 7.2718+/- 0.327 mean_var=131.4925+/-30.509, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.1118 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1333 ( 731 res) mpm08381 ( 731) 299 59 7.7e-10 mKIAA4050 ( 762 res) mbg07005 ( 762) 225 48 3.1e-06 mKIAA0304 ( 1744 res) mbg06324 (1744) 219 47 1.1e-05 mKIAA1506 ( 1520 res) mbg19167 (1520) 174 40 0.0015 mKIAA1820 ( 1518 res) mpm10033 (1518) 165 38 0.0041 >>mKIAA1333 ( 731 res) mpm08381 (731 aa) initn: 270 init1: 247 opt: 299 Z-score: 269.0 bits: 59.4 E(): 7.7e-10 Smith-Waterman score: 299; 33.333% identity (34.677% ungapped) in 129 aa overlap (18-144:18-143) 10 20 30 40 50 mKIAA1 GLKWQSLNTLKIMSSSIEQKKGSTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCM :.: .... : ::..: : .. :. :. . ..:. :. mKIAA1 RRARGQTEVSRAAGKMNENKPDNSQSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYH :.::.. . ...:.. :: :::..::..:..:: :..:. ::.::: : ::.:.:: mKIAA1 LMSSGIWQRGKEEEGVYGFLIEDIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLP 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 CALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKTKKKSRKGR :.:. . .. . . .: ::. mKIAA1 CGLQKECIFQFTDN---FASFCWKHRPVQAITSNKYSSSLPCTICLEFVEPIPTYNILQS 130 140 150 160 170 >>mKIAA4050 ( 762 res) mbg07005 (762 aa) initn: 218 init1: 155 opt: 225 Z-score: 204.2 bits: 47.5 E(): 3.1e-06 Smith-Waterman score: 251; 24.747% identity (28.161% ungapped) in 198 aa overlap (148-341:396-573) 120 130 140 150 160 170 mKIAA1 HCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKTKKKSRKG :: :. . : .: : :: mKIAA4 SVKKSRFWEPNKVSNNSGMLPNAVLPPSLDHNYAQWQEREESSHTEQP--PLMKKIIPAP 370 380 390 400 410 420 180 190 200 210 220 230 mKIAA1 RPRKTNLKGLPEDSRSTSSHGTDEMESSSYRDRSPHRSSP---NDTRPKCGFC-HVGEEE .:. : :.. . .. :. ::. . : .:.: .:..: :.. mKIAA4 KPKGP---GEPDSPTPLHPPTPPILSTDRSREDSPELNPPPGIDDNR-QCALCLMYGDDS 430 440 450 460 470 240 250 260 270 280 290 mKIAA1 NEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCT . :.: .. ... .: .: :.:. . : : ..:.: . . :::...: mKIAA4 ANDAGRL-LYIGQNEWTHVNCALWSAEVF--------EDDDGSLKNVHMAVIRGKQLRCE 480 490 500 510 520 530 300 310 320 330 340 350 mKIAA1 LCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEE .:..::::.:: . .:...::. :. . .... :.::. : mKIAA4 FCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYCQRHRDLIKGEVVPEN 540 550 560 570 580 360 370 mKIAA1 RESKSRGRVAIDQQLTQQQLNGN mKIAA4 GFEVFRRVFVDFEGISLRRKFLNGLEPENIHMMIGSMTIDCLGILNDLSDCEDKLFPIGY 590 600 610 620 630 640 >>mKIAA0304 ( 1744 res) mbg06324 (1744 aa) initn: 260 init1: 155 opt: 219 Z-score: 194.6 bits: 46.9 E(): 1.1e-05 Smith-Waterman score: 239; 24.516% identity (27.143% ungapped) in 155 aa overlap (189-342:601-741) 160 170 180 190 200 210 mKIAA1 NEHELEPSSPKTKKKSRKGRPRKTNLKGLPEDSRSTSSHGTDEMESSSYRDRSPHRSSPN ..:.. : :.......: : mKIAA0 WRRSTRLPNGVLPNAVLPPSLDHVYAQWRQQESETPESGQPPADPSAAFQSKDPAAFSHL 580 590 600 610 620 630 220 230 240 250 260 270 mKIAA1 DTRPKCGFC-HVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDI : .:..: . :. ... :.: .. ... .: .: ..:. . : .: .. mKIAA0 DDPRQCALCLKYGDADSKEAGRL-LYIGQNEWTHVNCAIWSAEVF--------EENDGSL 640 650 660 670 680 280 290 300 310 320 330 mKIAA1 KTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLY :.: . ::..:.: :: .::::.:: ...:....:. :. .:.: . . :.. mKIAA0 KNVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCA---RASYC--IFQDDKKVF 690 700 710 720 730 340 350 360 370 mKIAA1 CKNHSGNDERDEEDEERESKSRGRVAIDQQLTQQQLNGN :..:. mKIAA0 CQKHTDLLDGKEIVTPDGFDVLRRVYVDFEGINFKRKFLTGLEPDVINVLIGSIRINSLG 740 750 760 770 780 790 >>mKIAA1506 ( 1520 res) mbg19167 (1520 aa) initn: 283 init1: 132 opt: 174 Z-score: 156.1 bits: 39.6 E(): 0.0015 Smith-Waterman score: 182; 22.663% identity (26.846% ungapped) in 353 aa overlap (14-341:797-1119) 10 20 30 mKIAA1 GLKWQSLNTLKIMSSSIEQKKGSTRQRKCGFCK-----SNRDK :: . .: : . : :: :. : mKIAA1 NPPRLATSYRLKQPNVPFPPTSNGLSGYKDSSHGPAEGASLRPQWCCHCKVVILGSGVRK 770 780 790 800 810 820 40 50 60 70 80 mKIAA1 ECGQLLI-----SENQK------VAAHHKC-MLFSSALVSSHSDN-ESLGGF---SIEDV : .: . :: : : ..: .:.::: ...::: ::: .. ... mKIAA1 SCKDLTFVNKGSRENTKRMEKDIVFCSNNCFILYSSAAQAKNSDNKESLPSLPQSPMKEP 830 840 850 860 870 880 90 100 110 120 130 140 mKIAA1 QKEIKRGTKLMCSL-CHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCR .: ... .. . .: :: . :. . :... ::.. : . mKIAA1 SKAFHQYSNNISTLDVHCLPQFQEKVSPPASPPISFPPAF-EAAKVESKPDELKVTVKLK 890 900 910 920 930 940 150 160 170 180 190 mKIAA1 KHKKTAHNSEADLEESFNEHELEPSSPKTKKKSRKGRPRKTNLKG-LPEDS-RSTSSHGT . .:. . :: : .:: : . .: ... .:. . . mKIAA1 PRLRTVPVG------------LEDCRP-LNKKWRGMKWKKWSIHIVIPKGTFKPPCEDEI 950 960 970 980 990 200 210 220 230 240 250 mKIAA1 DEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEENEARGKLHIFNAK-KAAAHYKCMLFS ::. .. .: :.: : :: ::: : .. . : ...: .: .: :.: mKIAA1 DEFLKKLGTCLKPD-PVPKDCR-KCCFCHE-EGDGLTDGPARLLNLDLDLWVHLNCALWS 1000 1010 1020 1030 1040 260 270 280 290 300 310 mKIAA1 SGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCG . . . . . . .: ..:: .:::..: . ::: ::. :.. ::. :. mKIAA1 TEVYETQAGA--------LINVELALRRGLQMKCVFCHKTGATSGCHRFRCTNIYHFTCA 1050 1060 1070 1080 1090 1100 320 330 340 350 360 370 mKIAA1 VQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRVAIDQQLTQQQLNGN .. . .... . . : :. mKIAA1 TKAQCMFFKDKT-----MLCPMHKPKGIHEQQLSYFAVFRRVYVQRDEVRQIASIVQRGE 1110 1120 1130 1140 1150 >>mKIAA1820 ( 1518 res) mpm10033 (1518 aa) initn: 209 init1: 151 opt: 165 Z-score: 148.2 bits: 38.1 E(): 0.0041 Smith-Waterman score: 205; 25.954% identity (30.909% ungapped) in 262 aa overlap (92-341:1282-1513) 70 80 90 100 110 mKIAA1 SALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPG--ATIGCDVKTCHRTYHYHC :.: ::. :. .: :. : : :: mKIAA1 GSVLQQRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLG-DL--CGPYYPEHC 1260 1270 1280 1290 1300 120 130 140 150 160 170 mKIAA1 ALHDKAQIREKPS-QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKTKKKSRKGR . : ...:: .: ..: .. :: : . :.. . :: mKIAA1 LPKKKPKLKEKARLEGTLEEASLPLERTLKG----LECSASTTAAAPTTATITTPTALGR 1310 1320 1330 1340 1350 1360 180 190 200 210 220 230 mKIAA1 PRKTNLKGLP--EDSRSTSSHGTDEMESSSY-----RDRSPHRSSPNDTRP-KCGFCHVG . . . : . ::..: .. .: : : . . .. . .: .:. mKIAA1 LSRPDGPADPAKQGPLRTSARGLSRRLQSCYCCDGQGDGGEEVAQADKSRKHECS----K 1370 1380 1390 1400 1410 1420 240 250 260 270 280 mKIAA1 EEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQE-IKRGKR : .: : .... .: : ...:: : :.. . :: ::: .: . mKIAA1 EAPTEPGG-----DTQEHWVHEACAVWTSG-VYLVAGKL--FG-------LQEAMKVAVD 1430 1440 1450 1460 290 300 310 320 330 340 mKIAA1 MKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDE : :: : .:::::.: :.:..:::: :. . .::. . : : .:. mKIAA1 MPCTSCHEPGATISCSYKGCIHTYHYPCANDTGCTFIEEN----FTLKCPKHKRLPL 1470 1480 1490 1500 1510 350 360 370 mKIAA1 EDEERESKSRGRVAIDQQLTQQQLNGN 376 residues in 1 query sequences 1768641 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:55 2006 done: Mon Mar 27 10:53:55 2006 Scan time: 0.590 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]