FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0360.ptfa, 1055 aa
 vs ./tmplib.26680 library

1767962 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 11.3509+/-0.0103; mu= -8.6118+/- 0.686
 mean_var=570.4834+/-135.503, 0's: 0 Z-trim: 11  B-trim: 0 in 0/36
 Lambda= 0.0537

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1611  ( 558 res)   mph00982                   ( 558)  287   37  0.0073


>>mKIAA1611  ( 558 res)   mph00982                        (558 aa)
 initn: 1194 init1: 199 opt: 287  Z-score: 143.7  bits: 37.3 E(): 0.0073
Smith-Waterman score: 324;  26.016% identity (28.657% ungapped) in 369 aa overlap (407-764:155-500)

        380       390       400       410       420       430      
mKIAA0 LLAAQCLGAARGLEAAASPGLLKPKNGSGELGYGEVISSLEKPGGRHKCRFCAKVFGSDS
                                     : . .:: . .::   .::  :.:::.. :
mKIAA1 SHLKSHRRIHTGEKPFKCNHCGKAFSVRSNLTHHQVIHTGDKP---YKCNECGKVFSQTS
          130       140       150       160          170       180 

        440       450       460       470       480       490      
mKIAA0 ALQIHLRSHTGERPYKCNVCGNRFTTRGNLKVHFHRHREKYPHVQMNPHPVPEHLDYVIT
       .: :: :.::::.::.:: ::. :....::..:   :  . :.   .   :  . ... .
mKIAA1 SLTIHRRTHTGEKPYRCNECGKVFSSHSNLNTHQAIHTGEKPYKCSECGKVFTQNSHLAN
             190       200       210       220       230       240 

        500       510          520       530       540       550   
mKIAA0 SSGLPYGMSVPPEKAEEEA---GTPGGGVERKPLVASTTALSATESLTLLSTGTSTAVAP
          .  : .  : : .: .   .. .. . .. . ..    . .:   ... ..  :   
mKIAA1 HWRIHTGEK--PYKCNECGKAFSVYSSLTTHQAIHTGEKPYKCNECGKVFTQNSHLASHR
             250         260       270       280       290         

           560       570       580          590       600       610
mKIAA0 GLPTFNKFVLMKAVEPKSKADENTPPGSEGSAIA---GVADSGSATRMQLSKLVTSLPSW
       :. . .:        :  : .:     :. : .:    :  . .  . .    . :. : 
mKIAA1 GVHSGEK--------PY-KCEECGKLFSQTSNLARHWRVHTGEKPYKCSECGKAFSVRS-
     300                310       320       330       340          

              620       630       640            650       660     
mKIAA0 ALLTNHLKSTGSFPFPYVLEPLGASPSETSKL--QQLV---EKIDRQGAVAVASTASGAP
       .:.....  ::  :  :     :   :.::.:  .: .   ::  : .  . : .. .  
mKIAA1 SLIAHQVIHTGEKP--YKCTECGKVFSQTSSLSIHQRIHTGEKPYRCNECGKAFNSHSNL
     350       360         370       380       390       400       

         670       680       690       700       710       720     
mKIAA0 TTSAPAPSSSASGPNQCVICLRVLSCPRALRLHYGQHGGERPFKCKVCGRAFSTRGNLRA
       .:     ...   : .:. : .:..    :  :   : ::.:.::. ::.:::. ..: .
mKIAA1 NTHQVIHTGQK--PYKCMQCGKVFTQNSHLANHQRTHTGEKPYKCNECGKAFSVYSSLTT
       410         420       430       440       450       460     

         730       740       750       760       770       780     
mKIAA0 HFVGHKTSPAARAQNSCPICQKKFTNAVTLQQHVRMHLGGQIPNGGSALSEGGGAAQENS
       : . :    ...   .:  : : ::.   : .: : : :                     
mKIAA1 HQAIH----TGEKPYKCNECGKVFTQNSHLASHRRTHTGEKPYQCNKCDKAFSVRSSLTT
         470           480       490       500       510       520 

         790       800       810       820       830       840     
mKIAA0 SEQSTASGPGSFPQPQSQQPSPEEEMSEEEEEDEEEEEDVTDEDSLAGRGSESGGEKAIS
                                                                   
mKIAA1 HQAIHTGEKPYTCSECGKVFSRSSNLTSHQRLHVGQK                       
             530       540       550                               




1055 residues in 1 query   sequences
1767962 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:18:49 2006 done: Mon Mar 27 10:18:50 2006
 Scan time:  1.080 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]