# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbh00174.fasta.nr -Q ../query/mKIAA1504.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1504, 480 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918925 sequences Expectation_n fit: rho(ln(x))= 5.4115+/-0.000189; mu= 9.9904+/- 0.011 mean_var=85.6112+/-16.396, 0's: 30 Z-trim: 33 B-trim: 0 in 0/65 Lambda= 0.138615 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|81888440|sp|Q5BKS4.1|EXOD1_MOUSE RecName: Full= ( 688) 3157 641.4 2.1e-181 gi|26325030|dbj|BAC26269.1| unnamed protein produc ( 688) 3151 640.2 4.9e-181 gi|74141341|dbj|BAE35962.1| unnamed protein produc ( 636) 2821 574.2 3.4e-161 gi|109459327|ref|XP_001078485.1| PREDICTED: simila ( 374) 2161 442.0 1.2e-121 gi|158258625|dbj|BAF85283.1| unnamed protein produ ( 598) 2163 442.6 1.3e-121 gi|190359336|sp|A8K979.2|EXOD1_HUMAN RecName: Full ( 691) 2163 442.7 1.5e-121 gi|168270578|dbj|BAG10082.1| exonuclease domain-co ( 426) 1889 387.7 3.2e-105 gi|3417294|gb|AAC31669.1| Unknown gene product [Ho ( 426) 1888 387.5 3.7e-105 gi|61819685|ref|XP_582207.1| PREDICTED: similar to ( 689) 1843 378.7 2.7e-102 gi|114661443|ref|XP_001149333.1| PREDICTED: hypoth ( 339) 1569 323.6 4.9e-86 gi|126334116|ref|XP_001366655.1| PREDICTED: hypoth ( 696) 1308 271.7 4.4e-70 gi|224070575|ref|XP_002192871.1| PREDICTED: simila ( 661) 888 187.7 8.1e-45 gi|118098336|ref|XP_424602.2| PREDICTED: similar t ( 660) 865 183.1 2e-43 gi|149409288|ref|XP_001508438.1| PREDICTED: hypoth ( 683) 820 174.1 1e-40 gi|82179168|sp|Q5HZL1.1|EXOD1_XENLA RecName: Full= ( 687) 596 129.3 3.2e-27 gi|47218927|emb|CAF98125.1| unnamed protein produc ( 58) 234 56.0 3.1e-06 gi|82228769|sp|Q502M8.1|EXOD1_DANRE RecName: Full= ( 555) 246 59.2 3.2e-06 gi|189542036|ref|XP_001331152.2| PREDICTED: hypoth ( 314) 237 57.2 7.2e-06 gi|115896443|ref|XP_790825.2| PREDICTED: similar t ( 613) 238 57.7 1e-05 gi|12855883|dbj|BAB30489.1| unnamed protein produc ( 274) 210 51.8 0.00027 gi|156216010|gb|EDO36956.1| predicted protein [Nem ( 61) 201 49.4 0.00031 gi|109127804|ref|XP_001084714.1| PREDICTED: simila ( 279) 207 51.2 0.00042 gi|34534279|dbj|BAC86956.1| unnamed protein produc ( 279) 207 51.2 0.00042 gi|73958918|ref|XP_851106.1| PREDICTED: similar to ( 279) 206 51.0 0.00048 gi|119587240|gb|EAW66836.1| similar to RIKEN cDNA ( 328) 196 49.0 0.0022 gi|14714721|gb|AAH10503.1| Exonuclease domain cont ( 328) 196 49.0 0.0022 gi|190616509|gb|EDV32033.1| GF14242 [Drosophila an (1209) 202 50.7 0.0025 gi|193904332|gb|EDW03199.1| GH11108 [Drosophila gr (1269) 195 49.3 0.0069 >>gi|81888440|sp|Q5BKS4.1|EXOD1_MOUSE RecName: Full=Exon (688 aa) initn: 3157 init1: 3157 opt: 3157 Z-score: 3413.0 bits: 641.4 E(): 2.1e-181 Smith-Waterman score: 3157; 99.367% identity (100.000% similar) in 474 aa overlap (7-480:215-688) 10 20 30 mKIAA1 SQSNLQGLDDSRNTALLAWKMIRDGCLMKITRSLNK :::::::::::::::::::::::::::::: gi|818 TYRLFYKRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSLNK 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA1 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSACVNSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|818 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSVCVNSSC 250 260 270 280 290 300 100 110 120 130 140 150 mKIAA1 IKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 IKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALND 310 320 330 340 350 360 160 170 180 190 200 210 mKIAA1 SSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 SSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCM 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA1 PPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|818 PPVSDTNVSTSLNSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDV 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA1 KGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTK ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|818 KGAKHPGSDASAFKLPKCKPFPFTSVHASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTK 490 500 510 520 530 540 340 350 360 370 380 390 mKIAA1 RQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 RQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLI 550 560 570 580 590 600 400 410 420 430 440 450 mKIAA1 VSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSSPET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 VSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSSPET 610 620 630 640 650 660 460 470 480 mKIAA1 SRIHDRNLSFPIKNSLRLRPSMRH :::::::::::::::::::::::: gi|818 SRIHDRNLSFPIKNSLRLRPSMRH 670 680 >>gi|26325030|dbj|BAC26269.1| unnamed protein product [M (688 aa) initn: 3151 init1: 3151 opt: 3151 Z-score: 3406.5 bits: 640.2 E(): 4.9e-181 Smith-Waterman score: 3151; 99.156% identity (100.000% similar) in 474 aa overlap (7-480:215-688) 10 20 30 mKIAA1 SQSNLQGLDDSRNTALLAWKMIRDGCLMKITRSLNK :::::::::::::::::.:::::::::::: gi|263 TYRLFYKRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRNGCLMKITRSLNK 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA1 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSACVNSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|263 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSVCVNSSC 250 260 270 280 290 300 100 110 120 130 140 150 mKIAA1 IKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 IKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALND 310 320 330 340 350 360 160 170 180 190 200 210 mKIAA1 SSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCM 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA1 PPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PPVSDTNVSTSLNSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDV 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA1 KGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTK ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|263 KGAKHPGSDASAFKLPKCKPFPFTSVHASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTK 490 500 510 520 530 540 340 350 360 370 380 390 mKIAA1 RQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 RQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLI 550 560 570 580 590 600 400 410 420 430 440 450 mKIAA1 VSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSSPET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSSPET 610 620 630 640 650 660 460 470 480 mKIAA1 SRIHDRNLSFPIKNSLRLRPSMRH :::::::::::::::::::::::: gi|263 SRIHDRNLSFPIKNSLRLRPSMRH 670 680 >>gi|74141341|dbj|BAE35962.1| unnamed protein product [M (636 aa) initn: 2821 init1: 2821 opt: 2821 Z-score: 3050.3 bits: 574.2 E(): 3.4e-161 Smith-Waterman score: 2821; 99.289% identity (100.000% similar) in 422 aa overlap (7-428:215-636) 10 20 30 mKIAA1 SQSNLQGLDDSRNTALLAWKMIRDGCLMKITRSLNK :::::::::::::::::::::::::::::: gi|741 TYRLFYKRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSLNK 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA1 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSACVNSSC :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|741 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSVCVNSSC 250 260 270 280 290 300 100 110 120 130 140 150 mKIAA1 IKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALND 310 320 330 340 350 360 160 170 180 190 200 210 mKIAA1 SSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 SSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCM 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA1 PPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PPVSDTNVSTSLNSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDV 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA1 KGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTK ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|741 KGAKHPGSDASAFKLPKCKPFPFTSVHASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTK 490 500 510 520 530 540 340 350 360 370 380 390 mKIAA1 RQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLI 550 560 570 580 590 600 400 410 420 430 440 450 mKIAA1 VSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSSPET :::::::::::::::::::::::::::::::: gi|741 VSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKW 610 620 630 460 470 480 mKIAA1 SRIHDRNLSFPIKNSLRLRPSMRH >>gi|109459327|ref|XP_001078485.1| PREDICTED: similar to (374 aa) initn: 2135 init1: 1276 opt: 2161 Z-score: 2340.1 bits: 442.0 E(): 1.2e-121 Smith-Waterman score: 2161; 85.067% identity (95.733% similar) in 375 aa overlap (107-480:1-374) 80 90 100 110 120 130 mKIAA1 STVNAEENAQMNSACVNSSCIKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPT ::::::::.::::::::. ::::.:: .:: gi|109 MKADLYNIKHSFPLFTTRCSTSVQQLCAPT 10 20 30 140 150 160 170 180 190 mKIAA1 LNPPLTMQKPSKSDQLALNDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLA ::: : .::::::.::: .: ::::.:.:::::::::::::: ::::::::::::::::: gi|109 LNPALYIQKPSKSEQLASSDRSKSSALDSNLVLVSTTIPSVNLVSDVEMGHTFDCLPMLA 40 50 60 70 80 90 200 210 220 230 240 250 mKIAA1 EWEDVVLLPASQAEPDTDCMPPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQ ::::::::::::::::::::::.:::::.::..::::::: :.:::::::::.::.:::: gi|109 EWEDVVLLPASQAEPDTDCMPPISDTNVDTSFNSAERSLVSEQPETLSYENFDDLKETPQ 100 110 120 130 140 150 260 270 280 290 300 310 mKIAA1 NSETSKSIVYKSPHSTVYDVKGAKHPGSDASAFKLPKCKPFPFTSVRASAA-YPSVLRKD ::::::::::::::::::.:::::::::::::::::.:::::::::.:.:. .::::::. gi|109 NSETSKSIVYKSPHSTVYNVKGAKHPGSDASAFKLPECKPFPFTSVHANASSHPSVLRKQ 160 170 180 190 200 210 320 330 340 350 360 370 mKIAA1 PLLSGGTKRNSLSPPASPRTKRQTFTIHEEKPTSSICSPGTTSCRVSPSVLTSTVNLQEP :::::::::::.:::. ::.:.:::.::::: :::.::::::::.: ::::::::::::: gi|109 PLLSGGTKRNSFSPPVFPRAKKQTFAIHEEKSTSSLCSPGTTSCKVPPSVLTSTVNLQEP 220 230 240 250 260 270 380 390 400 410 420 430 mKIAA1 WKTGKMTPPLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKE ::::::::::::::::::::::::::::::::::::::::::.:.: :.::::::::::: gi|109 WKTGKMTPPLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQEDKKSCSYFKWEQTLQKE 280 290 300 310 320 330 440 450 460 470 480 mKIAA1 RTNGKALSHSSEGLTFSSPETSRIHDRNLSFPIKNSLRLRPSMRH :::::.: ::: :::::::.::.:.::.:.:: :::::::::::. gi|109 RTNGKTLPHSS-GLTFSSPDTSHIRDRSLNFPTKNSLRLRPSMRN 340 350 360 370 >>gi|158258625|dbj|BAF85283.1| unnamed protein product [ (598 aa) initn: 1757 init1: 1056 opt: 2163 Z-score: 2339.5 bits: 442.6 E(): 1.3e-121 Smith-Waterman score: 2163; 68.553% identity (86.373% similar) in 477 aa overlap (7-480:122-598) 10 20 30 mKIAA1 SQSNLQGLDDSRNTALLAWKMIRDGCLMKITRSLNK ::::::::::::::::::::.::::::::: gi|158 TYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITRSLNK 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSACVNS-- : :::: .::::::.: :::: ..::.::::::::.:: .. .: .:..::.: :.:: gi|158 VPTKKNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINPHEKVQMKSICANSPI 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 SCIKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLAL . . ::: :.:.::.:.:.. :.:::.::::::: ::.::::: :. ::: .:...::. gi|158 KAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAF 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 NDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTD : .::.::..:.:::::::.:.:.::::.::. :.::::.::.::::::::::: : ..: gi|158 NTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPEENVD 280 290 300 310 320 330 220 230 240 250 260 270 mKIAA1 CMPPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVY : :.::... :..:.:: .: .: : :.::: :..::::.:::::::::::::.:.: gi|158 CTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPHTTIY 340 350 360 370 380 390 280 290 300 310 320 330 mKIAA1 DVKGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASPR .:: :: :::: ::::::. : :. : :. ..: :: : :::::::::: :: : : gi|158 NVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPP 400 410 420 430 440 450 340 350 360 370 380 390 mKIAA1 TKRQTFTIHEEKPTSSICSPGTTSC-RVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSK .:.: ::::::::::: ::: .: : ::.::::::::::::.::::::::::::::: gi|158 AKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRSK 460 470 480 490 500 510 400 410 420 430 440 450 mKIAA1 RLIVSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSS ::.::::::::::.:::::.::::..:::::::::::::::::.:. . :::. :::::: gi|158 RLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHSTGGLTFSS 520 530 540 550 560 570 460 470 480 mKIAA1 PETSRIHDRNLSFPIKNSLRLRPSMRH ::::.: :::::. :::::::::::. gi|158 PETSHICDRNLSISTKNSLRLRPSMRN 580 590 >>gi|190359336|sp|A8K979.2|EXOD1_HUMAN RecName: Full=Exo (691 aa) initn: 1757 init1: 1056 opt: 2163 Z-score: 2338.7 bits: 442.7 E(): 1.5e-121 Smith-Waterman score: 2163; 68.553% identity (86.373% similar) in 477 aa overlap (7-480:215-691) 10 20 30 mKIAA1 SQSNLQGLDDSRNTALLAWKMIRDGCLMKITRSLNK ::::::::::::::::::::.::::::::: gi|190 TYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITRSLNK 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA1 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSACVNS-- : :::: .::::::.: :::: ..::.::::::::.:: .. .: .:..::.: :.:: gi|190 VPTKKNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINPHEKVQMKSICANSPI 250 260 270 280 290 300 100 110 120 130 140 150 mKIAA1 SCIKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLAL . . ::: :.:.::.:.:.. :.:::.::::::: ::.::::: :. ::: .:...::. gi|190 KAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAF 310 320 330 340 350 360 160 170 180 190 200 210 mKIAA1 NDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTD : .::.::..:.:::::::.:.:.::::.::. :.::::.::.::::::::::: : ..: gi|190 NTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPEENVD 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA1 CMPPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVY : :.::... :..:.:: .: .: : :.::: :..::::.:::::::::::::.:.: gi|190 CTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPHTTIY 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA1 DVKGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASPR .:: :: :::: ::::::. : :. : :. ..: :: : :::::::::: :: : : gi|190 NVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPP 490 500 510 520 530 540 340 350 360 370 380 390 mKIAA1 TKRQTFTIHEEKPTSSICSPGTTSC-RVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSK .:.: ::::::::::: ::: .: : ::.::::::::::::.::::::::::::::: gi|190 AKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRSK 550 560 570 580 590 600 400 410 420 430 440 450 mKIAA1 RLIVSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSS ::.::::::::::.:::::.::::..:::::::::::::::::.:. . :::. :::::: gi|190 RLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHSTGGLTFSS 610 620 630 640 650 660 460 470 480 mKIAA1 PETSRIHDRNLSFPIKNSLRLRPSMRH ::::.: :::::. :::::::::::. gi|190 PETSHICDRNLSISTKNSLRLRPSMRN 670 680 690 >>gi|168270578|dbj|BAG10082.1| exonuclease domain-contai (426 aa) initn: 1758 init1: 1057 opt: 1889 Z-score: 2045.4 bits: 387.7 E(): 3.2e-105 Smith-Waterman score: 1889; 66.353% identity (85.647% similar) in 425 aa overlap (59-480:2-426) 30 40 50 60 70 80 mKIAA1 KITRSLNKVLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMN ..::.::::::::.:: .. .: .:..::. gi|168 MSACNISIQGPSIYNKEPKNIINPHEKVQMK 10 20 30 90 100 110 120 130 140 mKIAA1 SACVNS--SCIKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKP : :.:: . . ::: :.:.::.:.:.. :.:::.::::::: ::.::::: :. ::: gi|168 SICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPICMQKQ 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 SKSDQLALNDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPA .:...::.: .::.::..:.:::::::.:.:.::::.::. :.::::.::.::::::::: gi|168 GKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPA 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA1 SQAEPDTDCMPPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVY :: : ..:: :.::... :..:.:: .: .: : :.::: :..::::.::::::::: gi|168 SQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVY 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA1 KSPHSTVYDVKGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNS ::::.:.:.:: :: :::: ::::::. : :. : :. ..: :: : :::::::::: gi|168 KSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNP 220 230 240 250 260 270 330 340 350 360 370 380 mKIAA1 LSPPASPRTKRQTFTIHEEKPTSSICSPGTTSC-RVSPSVLTSTVNLQEPWKTGKMTPPL :: : : .:.: ::::::::::: ::: .: : ::.::::::::::::.::::::: gi|168 CSPQAFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPL 280 290 300 310 320 330 390 400 410 420 430 440 mKIAA1 CKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHS ::::::::::.::::::::::.:::::.::::..:::::::::::::::::.:. . ::: gi|168 CKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHS 340 350 360 370 380 390 450 460 470 480 mKIAA1 SEGLTFSSPETSRIHDRNLSFPIKNSLRLRPSMRH . ::::::::::.: :::::. :::::::::::. gi|168 TGGLTFSSPETSHICDRNLSISTKNSLRLRPSMRN 400 410 420 >>gi|3417294|gb|AAC31669.1| Unknown gene product [Homo s (426 aa) initn: 1757 init1: 1056 opt: 1888 Z-score: 2044.3 bits: 387.5 E(): 3.7e-105 Smith-Waterman score: 1888; 66.353% identity (85.647% similar) in 425 aa overlap (59-480:2-426) 30 40 50 60 70 80 mKIAA1 KITRSLNKVLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMN ..::.::::::::.:: .. .: .:..::. gi|341 MSACNISIQGPSIYNKEPKNIINPHEKVQMK 10 20 30 90 100 110 120 130 140 mKIAA1 SACVNS--SCIKGQLQPKSNMKADLYNIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKP : :.:: . . ::: :.:.::.:.:.. :.:::.::::::: ::.::::: :. ::: gi|341 SICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQ 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 SKSDQLALNDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPA .:...::.: .::.::..:.:::::::.:.:.::::.::. :.::::.::.::::::::: gi|341 GKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPA 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA1 SQAEPDTDCMPPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVY :: : ..:: :.::... :..:.:: .: .: : :.::: :..::::.::::::::: gi|341 SQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVY 160 170 180 190 200 210 270 280 290 300 310 320 mKIAA1 KSPHSTVYDVKGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNS ::::.:.:.:: :: :::: ::::::. : :. : :. ..: :: : :::::::::: gi|341 KSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNP 220 230 240 250 260 270 330 340 350 360 370 380 mKIAA1 LSPPASPRTKRQTFTIHEEKPTSSICSPGTTSC-RVSPSVLTSTVNLQEPWKTGKMTPPL :: : : .:.: ::::::::::: ::: .: : ::.::::::::::::.::::::: gi|341 CSPQAFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPL 280 290 300 310 320 330 390 400 410 420 430 440 mKIAA1 CKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHS ::::::::::.::::::::::.:::::.::::..:::::::::::::::::.:. . ::: gi|341 CKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHS 340 350 360 370 380 390 450 460 470 480 mKIAA1 SEGLTFSSPETSRIHDRNLSFPIKNSLRLRPSMRH . ::::::::::.: :::::. :::::::::::. gi|341 TGGLTFSSPETSHICDRNLSISTKNSLRLRPSMRN 400 410 420 >>gi|61819685|ref|XP_582207.1| PREDICTED: similar to exo (689 aa) initn: 1773 init1: 1079 opt: 1843 Z-score: 1992.8 bits: 378.7 E(): 2.7e-102 Smith-Waterman score: 1843; 61.925% identity (80.753% similar) in 478 aa overlap (7-480:215-689) 10 20 30 mKIAA1 SQSNLQGLDDSRNTALLAWKMIRDGCLMKITRSLNK :::::::::::::::::::::::::::::: gi|618 TYKIFYRRKPKGLSGALQEVGMQFLGREHFGLDDSRNTALLAWKMIRDGCLMKITRSLNK 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA1 VLTKKNPKILARNLGTDQVEEAATCNMSIQGPSIYQKELQSTVNAEENAQMNSACVNS-- : ::. :.:..:::. :::::..::. . . :::: : ..... .. ::.:. ::: gi|618 VSTKRIPNIFTRNLNMDQVEETSTCTNNTHDPSIYGGEPKNSIKPYKKIQMKSVGVNSPI 250 260 270 280 290 300 100 110 120 130 140 150 mKIAA1 SCIKGQLQPKSNMKADLYNIRHSFPLFT-TKSSTSVDQLHSPTLNPPLTMQKPSKSDQLA . . ::: :...:: : :.: . : . ::: ::. ::.: . : : ::: . ...:: gi|618 KVQQDQLQQKDSIKAGLCNVRSCLSLSNATKSWTSLGQLQSSSRNTP--MQK-QINQHLA 310 320 330 340 350 360 160 170 180 190 200 210 mKIAA1 LNDSSKSSTLNSNLVLVSTTIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDT .: .::: ...:.:: ::::: : :.:::.:.. ..:::::::.::::.:::::: : . gi|618 FNTNSKSLAVGSELVPVSTTISSFNNVSDIEVSSALDCLPMLADWEDVALLPASQPEQNI 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA1 DCMPPVSDTNVSTSLHSAERSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTV .:.: :::.::.:::.:.:: .: :: : ::.::: .::::.: :::::::::::.:. gi|618 SCIPLVSDSNVDTSLNSGERVMVLEESEMLSHENFGGTEETPQKSVTSKSIVYKSPHTTI 430 440 450 460 470 480 280 290 300 310 320 330 mKIAA1 YDVKGAKHPGSDASAFKLPKCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASP :.:: :: ::::. .::::. : :.:: .....: :: : : .::: ::: : gi|618 YNVKEAKDPGSDTFGFKLPERKSSNFNSVNSNVSHPLVLGKHRLCLDDSKRNPSSPPLFP 490 500 510 520 530 540 340 350 360 370 380 390 mKIAA1 RTKRQTFTIHEEKPTSSICSPGTTSC-RVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRS .:.::::::::::.:: :::. : .. :::::::::::::::. :.::::::::::: gi|618 PAKKQTFTIHEEKPASSNDSPGAISSWKILPSVLTSTVNLQEPWKSRKITPPLCKCGRRS 550 560 570 580 590 600 400 410 420 430 440 450 mKIAA1 KRLIVSNNGPNHGKAFYCCPVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFS ::: ::::::::::.::::::::::. ::::::::::::::.::.:. .:: : ::::: gi|618 KRLTVSNNGPNHGKVFYCCPVGKYQEKRKCCGYFKWEQTLQEERANSIVLSDSPGGLTFS 610 620 630 640 650 660 460 470 480 mKIAA1 SPETSRIHDRNLSFPIKNSLRLRPSMRH : ::. : :::..: :::::::::::. gi|618 SLETNLICDRNVNFSTKNSLRLRPSMRN 670 680 >>gi|114661443|ref|XP_001149333.1| PREDICTED: hypothetic (339 aa) initn: 1569 init1: 872 opt: 1569 Z-score: 1700.9 bits: 323.6 E(): 4.9e-86 Smith-Waterman score: 1569; 68.437% identity (86.136% similar) in 339 aa overlap (143-480:1-339) 120 130 140 150 160 170 mKIAA1 NIRHSFPLFTTKSSTSVDQLHSPTLNPPLTMQKPSKSDQLALNDSSKSSTLNSNLVLVST ::: .:...::.: .::.::..:.:::::: gi|114 MQKQGKNEHLAFNTKSKASTVGSELVLVST 10 20 30 180 190 200 210 220 230 mKIAA1 TIPSVNHVSDVEMGHTFDCLPMLAEWEDVVLLPASQAEPDTDCMPPVSDTNVSTSLHSAE :.:.:.::::.::. :.::::.::.::::::::::: : ..:: :.::... :..:.: gi|114 TVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPEENVDCTVPISDSDLEISFNSGE 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 RSLVPEEPETLSYENFEDLQETPQNSETSKSIVYKSPHSTVYDVKGAKHPGSDASAFKLP : .: .: : :.::: :..::::.:::::::::::::.:.:.:: :: :::: :::::: gi|114 RLMVLKELEMSSHENFGDIDETPQKSETSKSIVYKSPHTTIYNVKEAKDPGSDISAFKLP 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 KCKPFPFTSVRASAAYPSVLRKDPLLSGGTKRNSLSPPASPRTKRQTFTIHEEKPTSSIC . : :. : :. ..: :: : :::::::::: :: : : .:.: ::::::::::: : gi|114 EHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPPAKKQPFTIHEEKPTSSDC 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 SPGTTSC-RVSPSVLTSTVNLQEPWKTGKMTPPLCKCGRRSKRLIVSNNGPNHGKAFYCC :: .: . ::.::::::::::::.:::::::::::::::::.::::::::::.:::: gi|114 SPVRSSSWKRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRSKRLVVSNNGPNHGKVFYCC 220 230 240 250 260 270 420 430 440 450 460 470 mKIAA1 PVGKYQQDRKCCGYFKWEQTLQKERTNGKALSHSSEGLTFSSPETSRIHDRNLSFPIKNS :.::::..:::::::::::::::::.:. . :::. ::::.:::::.: :::::. ::: gi|114 PIGKYQENRKCCGYFKWEQTLQKERANSMVPSHSTGGLTFNSPETSHICDRNLSISTKNS 280 290 300 310 320 330 480 mKIAA1 LRLRPSMRH ::::::::. gi|114 LRLRPSMRN 480 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 14:27:56 2009 done: Sat Mar 14 14:34:51 2009 Total Scan time: 931.390 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]