FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1405.ptfa, 355 aa
 vs ./tmplib.26680 library

1768662 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.2495+/-0.00546; mu= 8.9041+/- 0.364
 mean_var=148.2570+/-34.763, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.1053

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0359  ( 757 res)   mbg06791                   ( 757)  187   40 0.00068


>>mKIAA0359  ( 757 res)   mbg06791                        (757 aa)
 initn:  99 init1:  99 opt: 187  Z-score: 162.2  bits: 39.6 E(): 0.00068
Smith-Waterman score: 199;  26.991% identity (30.653% ungapped) in 226 aa overlap (56-274:465-670)

          30        40        50        60        70         80    
mKIAA1 SAPEQTAVAFCTSVVPLCEVGCGEQVAGASRVCDACFLLPAGHSLQLLEQQV-VGGEQA-
                                     :  ::  .:  : ... .:... :::..  
mKIAA0 KRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEML--GAKIKAMESKLLVGGKNIV
          440       450       460       470         480       490  

              90       100       110       120       130       140 
mKIAA1 --KNKDLREKHKRRKRYADERKKQLVAALQNSDEDGGDWVLLNVYDSIQEEVRAKSKLLE
          :.. .  ...:.. :......     :  ..:     : ..: :.:.::  :.: :.
mKIAA0 DHTNEQQKILEQKRQEIAEQKRREREIQQQMESRDEETLELKETYTSLQQEVDIKTKKLK
            500       510       520       530       540       550  

             150       160       170       180       190       200 
mKIAA1 KMQRKVRAAEVEIKDLQSEFQLEKIDYLATIRRQERDSMLFQQLLEQVQPLIRRDCNYSN
       :.  :..:...::.::: :   :. .   :  .  :.  : . ..:.  :: ...     
mKIAA0 KLFSKLQAVKAEIHDLQEEHIKERQELEQTQNELTRELKLKHLIIENFIPLEEKN-----
            560       570       580       590       600            

             210       220       230       240       250       260 
mKIAA1 LEKIRRESSWDEDNGFWKIPDPIILKTSLPVAVPTGTQNKPARKTSAVDSGEPHMQEEDR
         ::  .: .:...  ::.  ::   : :       .:.   : .:::   .: .... :
mKIAA0 --KIMNRSFFDDEEDHWKL-HPI---TRLE------NQQMMKRPVSAVGYKRP-LSQHAR
         610       620           630             640        650    

                270       280       290       300       310        
mKIAA1 YKLMLS---RSDSENIASNYFRSKRASQILSTDPMKSLTYHNSPPGLNSSLSNNSALPPT
       ...:.    :  .:::                                            
mKIAA0 MSMMIRPEPRYRAENIMLLELDMPSRTTRDYEGPAISPKVQAALDAALQDEDEIQVDASS
          660       670       680       690       700       710    




355 residues in 1 query   sequences
1768662 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:43:56 2006 done: Mon Mar 27 10:43:56 2006
 Scan time:  0.590 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]