# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg22259.fasta.nr -Q ../query/mKIAA1644.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1644, 253 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918738 sequences Expectation_n fit: rho(ln(x))= 5.3744+/-0.000194; mu= 8.6741+/- 0.011 mean_var=95.3237+/-18.432, 0's: 39 Z-trim: 40 B-trim: 462 in 1/65 Lambda= 0.131363 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148672505|gb|EDL04452.1| mCG141069 [Mus musculu ( 242) 1510 295.7 4.8e-78 gi|109481095|ref|XP_576321.2| PREDICTED: hypotheti ( 240) 1498 293.4 2.3e-77 gi|109482662|ref|XP_001078061.1| PREDICTED: hypoth ( 242) 1498 293.4 2.3e-77 gi|109094508|ref|XP_001106595.1| PREDICTED: hypoth ( 288) 1342 263.9 2.1e-68 gi|119893344|ref|XP_001256398.1| PREDICTED: simila ( 198) 1330 261.5 7.7e-68 gi|194226959|ref|XP_001914739.1| PREDICTED: simila ( 242) 1291 254.2 1.5e-65 gi|224095900|ref|XP_002188572.1| PREDICTED: hypoth ( 200) 1068 211.8 6.9e-53 gi|92096267|gb|AAI15048.1| Zgc:136242 [Danio rerio ( 203) 882 176.6 2.8e-42 gi|47224385|emb|CAG08635.1| unnamed protein produc ( 194) 878 175.8 4.7e-42 gi|55250984|emb|CAH68995.1| novel protein [Danio r ( 207) 874 175.1 8.2e-42 gi|189542971|ref|XP_001921513.1| PREDICTED: hypoth ( 206) 855 171.5 1e-40 gi|119593745|gb|EAW73339.1| hCG1649293 [Homo sapie ( 120) 811 162.9 2.2e-38 gi|114658945|ref|XP_510599.2| PREDICTED: hypotheti ( 163) 235 53.9 2e-05 gi|148707634|gb|EDL39581.1| transmembrane protein ( 237) 191 45.7 0.0084 >>gi|148672505|gb|EDL04452.1| mCG141069 [Mus musculus] (242 aa) initn: 1510 init1: 1510 opt: 1510 Z-score: 1557.5 bits: 295.7 E(): 4.8e-78 Smith-Waterman score: 1510; 98.592% identity (99.061% similar) in 213 aa overlap (41-253:30-242) 20 30 40 50 60 70 mKIAA1 CELGPPTSITIPENLPQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAVF : . :::::::::::::::::::::::::: gi|148 PQAPAGCCLSAVPPLRVTKQVWGDSCRDSLSYTGSAGRVNASRMMTSCGQRSRNVLAVF 10 20 30 40 50 80 90 100 110 120 130 mKIAA1 SLLFPAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SLLFPAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEF 60 70 80 90 100 110 140 150 160 170 180 190 mKIAA1 QAVMQANLTAGPEGYMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QAVMQANLTAGPEGYMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWG 120 130 140 150 160 170 200 210 220 230 240 250 mKIAA1 IQGRWMKQDPRRWGNPARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IQGRWMKQDPRRWGNPARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQS 180 190 200 210 220 230 mKIAA1 SSA ::: gi|148 SSA 240 >>gi|109481095|ref|XP_576321.2| PREDICTED: hypothetical (240 aa) initn: 1498 init1: 1498 opt: 1498 Z-score: 1545.3 bits: 293.4 E(): 2.3e-77 Smith-Waterman score: 1498; 98.104% identity (99.526% similar) in 211 aa overlap (43-253:30-240) 20 30 40 50 60 70 mKIAA1 LGPPTSITIPENLPQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAVFSL . :::::::::::::::::::::::::::: gi|109 MPCEGGLALDCLDSLERQPFISAGQRPPSYTGSAGRVNASRMMTSCGQRSRNVLAVFSL 10 20 30 40 50 80 90 100 110 120 130 mKIAA1 LFPAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LFPAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQA 60 70 80 90 100 110 140 150 160 170 180 190 mKIAA1 VMQANLTAGPEGYMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VMQANLTAGPEGYMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQ 120 130 140 150 160 170 200 210 220 230 240 250 mKIAA1 GRWMKQDPRRWGNPARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSS ::::::::::::::::::::::::::::::::.:::::::::::::::::::::.::::: gi|109 GRWMKQDPRRWGNPARAPRPGQPAPQPQPPPGALPQAPQAVHTLRGDTHSPPLMAFQSSS 180 190 200 210 220 230 mKIAA1 A : gi|109 A 240 >>gi|109482662|ref|XP_001078061.1| PREDICTED: hypothetic (242 aa) initn: 1498 init1: 1498 opt: 1498 Z-score: 1545.2 bits: 293.4 E(): 2.3e-77 Smith-Waterman score: 1498; 98.104% identity (99.526% similar) in 211 aa overlap (43-253:32-242) 20 30 40 50 60 70 mKIAA1 LGPPTSITIPENLPQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAVFSL . :::::::::::::::::::::::::::: gi|109 CMPCEGGLALDCLDSLERQPFISAGQRPPSYTGSAGRVNASRMMTSCGQRSRNVLAVFSL 10 20 30 40 50 60 80 90 100 110 120 130 mKIAA1 LFPAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LFPAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQA 70 80 90 100 110 120 140 150 160 170 180 190 mKIAA1 VMQANLTAGPEGYMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VMQANLTAGPEGYMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQ 130 140 150 160 170 180 200 210 220 230 240 250 mKIAA1 GRWMKQDPRRWGNPARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSS ::::::::::::::::::::::::::::::::.:::::::::::::::::::::.::::: gi|109 GRWMKQDPRRWGNPARAPRPGQPAPQPQPPPGALPQAPQAVHTLRGDTHSPPLMAFQSSS 190 200 210 220 230 240 mKIAA1 A : gi|109 A >>gi|109094508|ref|XP_001106595.1| PREDICTED: hypothetic (288 aa) initn: 1280 init1: 1280 opt: 1342 Z-score: 1384.5 bits: 263.9 E(): 2.1e-68 Smith-Waterman score: 1342; 93.970% identity (96.482% similar) in 199 aa overlap (56-253:1-199) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAV-FSLLFPAVLSAHFRV ::::::.: ::::: ::::: ::::::::: gi|109 MTSCGQQSLNVLAVLFSLLFSAVLSAHFRV 10 20 30 90 100 110 120 130 140 mKIAA1 CEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEG ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::. :: gi|109 CEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNETEFQAVMQANLTASSEG 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 YMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWG :::::::::::::::::::: :::::::::::::::::::::.::::::::::::::::: gi|109 YMHNNYTALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIQGRWMKQDPRRWG 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 NPARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA :::::::::: ::::::::: ::::::::::::::.::::::::::::: gi|109 NPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMTFQSSSAWTHLRLKEQAV 160 170 180 190 200 210 gi|109 EGPTRGAAMPPGLSRARERRHVPATCCTVFITAAVAGVLGDLLSLQSLSPQGQLLDVHGC 220 230 240 250 260 270 >>gi|119893344|ref|XP_001256398.1| PREDICTED: similar to (198 aa) initn: 1330 init1: 1330 opt: 1330 Z-score: 1374.2 bits: 261.5 E(): 7.7e-68 Smith-Waterman score: 1330; 91.919% identity (96.465% similar) in 198 aa overlap (56-253:1-198) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAVFSLLFPAVLSAHFRVC ::::::. :::::.:::. :::::::::: gi|119 MTSCGQQPLNVLAVLSLLISAVLSAHFRVC 10 20 30 90 100 110 120 130 140 mKIAA1 EPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGY :::::::::::::::::::::::::.:::::::::::::::::::::::::::::: ::: gi|119 EPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNETEFQAVMQANLTAGSEGY 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 MHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGN ::::::::::::::::::: :::::::::::::::::::::.::::.::::::::::::: gi|119 MHNNYTALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLARWGIHGRWMKQDPRRWGN 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 PARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA ::::::::::::::::::: :::::::::::. :.:.::::::::::: gi|119 PARAPRPGQPAPQPQPPPGPLPQAPQAVHTLQRDSHTPPLMTFQSSSA 160 170 180 190 >>gi|194226959|ref|XP_001914739.1| PREDICTED: similar to (242 aa) initn: 1291 init1: 1291 opt: 1291 Z-score: 1333.2 bits: 254.2 E(): 1.5e-65 Smith-Waterman score: 1291; 88.889% identity (96.970% similar) in 198 aa overlap (56-253:1-198) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAVFSLLFPAVLSAHFRVC ::::::.: .::::.:::. :::::::::: gi|194 MTSCGQQSLDVLAVLSLLISAVLSAHFRVC 10 20 30 90 100 110 120 130 140 mKIAA1 EPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGY :::::::::::::::::::::::::.:::::::::::::::::::::::::::::: ::: gi|194 EPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNETEFQAVMQANLTAGSEGY 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 MHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGN :::::::::::::::::::::.::::::::::::::::::.::::.::::::::::::: gi|194 THNNYTALLGVWIYGFFVLTLLALDLLYYSAMNYDICKVYLARWGIHGRWMKQDPRRWGN 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 PARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA :::.:.::: ::::::::: :::::::..::.::.:.::::::::.:: gi|194 PARVPQPGQQAPQPQPPPGPLPQAPQAMRTLQGDAHGPPLMTFQSASAWDRKGCTIGVRV 160 170 180 190 200 210 gi|194 RPPLQPDSTSPGARRHQFLELENGDPRQHLGV 220 230 240 >>gi|224095900|ref|XP_002188572.1| PREDICTED: hypothetic (200 aa) initn: 1016 init1: 1016 opt: 1068 Z-score: 1105.8 bits: 211.8 E(): 6.9e-53 Smith-Waterman score: 1068; 72.864% identity (86.935% similar) in 199 aa overlap (56-253:1-199) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAVF-SLLFPAVLSAHFRV ::::::.: ::: :. :::. ::::::::: gi|224 MTSCGQQSLNVLMVLLSLLLSAVLSAHFRV 10 20 30 90 100 110 120 130 140 mKIAA1 CEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEG ::::::.:::::::::::::::::....:::::::::::::::::::.::: :::.. .: gi|224 CEPYTDYKGRYHFGFHCPRLSDNKSYIFCCHHNNTVFKYCCNETEFQTVMQMNLTGNADG 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 YMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWG ::::::.::::::::::::. ::.:::::::.::::::: ::.::::.:.:: : :: gi|224 YMHNNYSALLGVWIYGFFVVILLILDLLYYSSMNYDICKFYLARWGIHGKWMTQGQSRWI 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 NPARAPRPGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA :::. :: :: :. :: : . :.::::.::. ::::..:::.:: gi|224 NPAQDPRQTQPQPETQPQTQPQPPTSQTVHTLKGDALSPPLVSFQSTSAW 160 170 180 190 200 >>gi|92096267|gb|AAI15048.1| Zgc:136242 [Danio rerio] (203 aa) initn: 855 init1: 782 opt: 882 Z-score: 915.2 bits: 176.6 E(): 2.8e-42 Smith-Waterman score: 882; 61.576% identity (80.296% similar) in 203 aa overlap (56-253:1-202) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAV-FSLLFPAVLSAHFRV :: :. : :.::. : :: :.::::::: gi|920 MTMNGRWSFNTLAIIFILLSTAALSAHFRV 10 20 30 90 100 110 120 130 140 mKIAA1 CEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEG ::::.::::::::::::::::::::...:::::::.:::::::::::.::: ::::. .: gi|920 CEPYSDHKGRYHFGFHCPRLSDNKTYIFCCHHNNTAFKYCCNETEFQSVMQLNLTANSDG 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 YMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWG . :::::::.:::::::::..::.::.::::::::..:.::: .::. :::.:: .: gi|920 FAHNNYTALIGVWIYGFFVMVLLALDFLYYSAMNYELCRVYLEKWGLGGRWLKQARSQWH 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 NPARAPR----PGQPAPQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA . .. . :: . : : . . :.:::::.:: :..::.:.: gi|920 STVQEGELNTGPGL-SQQQQLHLHHHHHHHHPRHSLRGDTQSPTLLSFQTSTAW 160 170 180 190 200 >>gi|47224385|emb|CAG08635.1| unnamed protein product [T (194 aa) initn: 861 init1: 777 opt: 878 Z-score: 911.4 bits: 175.8 E(): 4.7e-42 Smith-Waterman score: 878; 61.500% identity (82.000% similar) in 200 aa overlap (56-253:1-194) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAV-FSLLFPAVLSAHFRV :: .:.: :::.: : :: :.::::.:: gi|472 MTITSQQSFNVLTVIFLLLSTAALSAHYRV 10 20 30 90 100 110 120 130 140 mKIAA1 CEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEG ::::.::::::::::::::::::::...:::::::.:::::::::::.::: :::. .: gi|472 CEPYSDHKGRYHFGFHCPRLSDNKTYMFCCHHNNTAFKYCCNETEFQTVMQLNLTTTSDG 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 YMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWG : :::::::.:::::::::..::.::.:::::.::..:.::: .::. :::.:. .:. gi|472 YAHNNYTALVGVWIYGFFVMVLLALDFLYYSAINYELCRVYLEKWGLGGRWLKKARSQWN 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 NPARAPRPGQPAPQPQPP-PGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA :. .. : :: :: : :. :.:::...:: :. ...:.: gi|472 RSM--PEESETQAQAQPMVPG--PYQPR--HSLRGESQSPTLLPYNTSTA 160 170 180 190 >>gi|55250984|emb|CAH68995.1| novel protein [Danio rerio (207 aa) initn: 857 init1: 784 opt: 874 Z-score: 906.9 bits: 175.1 E(): 8.2e-42 Smith-Waterman score: 874; 60.194% identity (78.641% similar) in 206 aa overlap (56-253:1-206) 30 40 50 60 70 80 mKIAA1 PQTCPQATLMEAFSQLIFPGSAGRVNASRMMTSCGQRSRNVLAV-FSLLFPAVLSAHFRV : :. : :.::. : :: :.::::::: gi|552 MIMNGRWSFNTLAIIFILLSTAALSAHFRV 10 20 30 90 100 110 120 130 140 mKIAA1 CEPYTDHKGRYHFGFHCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEG ::::.::::::::::::::::::::...:::::::.:::::::::::.::: ::::. .. gi|552 CEPYSDHKGRYHFGFHCPRLSDNKTYIFCCHHNNTAFKYCCNETEFQSVMQLNLTANSDS 40 50 60 70 80 90 150 160 170 180 190 200 mKIAA1 YMHNNYTALLGVWIYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWG . :::::::.:::::::::..::.::.::::::::..:.::: .::. :::.:: .: gi|552 FAHNNYTALIGVWIYGFFVMVLLALDFLYYSAMNYELCRVYLEKWGLGGRWLKQARSQWH 100 110 120 130 140 150 210 220 230 240 250 mKIAA1 NPARAPR----PGQPAPQPQPPPGTLPQAPQ---AVHTLRGDTHSPPLMTFQSSSA . .. . :: : : : . . :.:::::.:: :..::.:.: gi|552 STVQEGELNTGPGLSQQQQQQQQLHLHHHHHHHHPRHSLRGDTQSPTLLSFQTSTAW 160 170 180 190 200 253 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 07:09:17 2009 done: Sun Mar 15 07:14:27 2009 Total Scan time: 727.970 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]