FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1630.ptfa, 293 aa
 vs ./tmplib.26680 library

1768724 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.0382+/-0.00406; mu= 15.4993+/- 0.272
 mean_var=70.4157+/-15.731, 0's: 0 Z-trim: 3  B-trim: 5 in 1/35
 Lambda= 0.1528

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4192  ( 1066 res)   mbh00584                  (1066)  659  155 1.7e-38


>>mKIAA4192  ( 1066 res)   mbh00584                       (1066 aa)
 initn: 632 init1: 540 opt: 659  Z-score: 783.3  bits: 154.8 E(): 1.7e-38
Smith-Waterman score: 659;  39.726% identity (42.963% ungapped) in 292 aa overlap (4-282:451-733)

                                          10        20        30   
mKIAA1                            TFQVHGDASFCGQGIVLETFTLSNLPHFRIGGS
                                     .::::.: ::::: ::: ::.:: .   :.
mKIAA4 EAADPVVMGKTKAEQFYCGDTEGKKVMSILLHGDAAFAGQGIVYETFHLSDLPSYTTHGT
              430       440       450       460       470       480

            40        50        60        70        80        90   
mKIAA1 IHLIVNNQLGYTTPAERGRSSLYSSDIGKLVGCAIIHVNGDSPEEVVRATRLAFEYQRQF
       .:..::::.:.::  . .::: : .:....:.  :.:::.:.:: :. . ..: :..  :
mKIAA4 VHVVVNNQIGFTTDPRMARSSPYPTDVARVVNAPIFHVNSDDPEAVMYVCKVAAEWRNTF
              490       500       510       520       530       540

           100       110       120       130       140             
mKIAA1 RKDVIVDLLCYRQWGHNELDEPFFTNPVMYKIIRARKSIPDTYAEHLIASGLMTQ----E
       .:::.:::.:::. ::::.:::.::.:.::: :: .: . . ::: :...:...:    :
mKIAA4 HKDVVVDLVCYRRNGHNEMDEPMFTQPLMYKQIRKQKPVLQKYAELLVSQGVVNQPEYEE
              550       560       570       580       590       600

     150          160        170       180           190       200 
mKIAA1 EVSD---IKTSYYTKLNDH-LANVAHYSPPATNLQARWQGLV----QPEACVTTWDTGVP
       :.:    :    .:. .:. . .. :.      :.. : :.     ::.. .:  .::. 
mKIAA4 EISKYDKICEEAFTRSKDEKILHIKHW------LDSPWPGFFTLDGQPRS-MTCPSTGLE
              610       620             630       640        650   

             210        220       230       240       250       260
mKIAA1 LELLRFIGVKSVEVP-EELQVHSHLLKMYVQSRMEKVKNGSGLDWATAETLALGSLLAQG
        ..:  ::  .  :: :.. .:. : .. ...: : : : . .::: :: .:.:::: .:
mKIAA4 EDVLFHIGKVASSVPVENFTIHGGLSRI-LKTRRELVTNRT-VDWALAEYMAFGSLLKEG
           660       670       680        690        700       710 

              270       280       290                              
mKIAA1 QTFPCSIMASRKCSELHELHVIFWVSMATCHFH                           
            : .  .. .  :. ::.                                      
mKIAA4 IHVRLSGQDVERGTFSHRHHVLHDQNVDKRTCIPMNHLWPNQAPYTVCNSSLSEYGVLGF
             720       730       740       750       760       770 




293 residues in 1 query   sequences
1768724 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:49:59 2006 done: Mon Mar 27 10:50:00 2006
 Scan time:  0.530 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]