FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0295.ptfa, 804 aa
 vs ./tmplib.26680 library

1768213 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.8329+/-0.00607; mu= 0.9917+/- 0.397
 mean_var=286.1780+/-70.636, 0's: 0 Z-trim: 5  B-trim: 151 in 1/35
 Lambda= 0.0758

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1281  ( 196 res)   mpj01215                   ( 196)  433   60 2.5e-10


>>mKIAA1281  ( 196 res)   mpj01215                        (196 aa)
 initn: 412 init1: 251 opt: 433  Z-score: 277.8  bits: 60.3 E(): 2.5e-10
Smith-Waterman score: 452;  42.938% identity (49.673% ungapped) in 177 aa overlap (555-710:1-174)

          530       540       550       560              570       
mKIAA0 YRQETESRMWTYVYPAKYSDIKSEDDRWKEERDRKLKEDRSRSK-------DSVP-----
                                     .:..:::::  :.        .:.:     
mKIAA1                               DREKKLKEDSPRKTPNKESGVSSLPVSLTN
                                             10        20        30

             580       590       600               610       620   
mKIAA0 -KEDGKESTSSDCKLPPSEESRLGSKEPRPSVH--------VPVSSPLTQHQSYIPYMHG
        ::. ::.   : .    ::..: . . .  :.        : ::::..:::::: :.:.
mKIAA1 IKEEPKEGKRPDSQ--SVEENKLKNDDRKTPVNWKDSRGTRVAVSSPMSQHQSYIQYLHA
               40          50        60        70        80        

           630       640       650       660       670       680   
mKIAA0 YSYSQSYDPNHPSYRGMPAVMMQNYPGSYLPSSYSFSPYGSKVSGGEDADKARASPSVSC
       : : : :::.::.::..  :.:..:::.::  .. .  :: :.:: :.:.:. .:::.. 
mKIAA1 YPYPQMYDPSHPAYRAVSPVLMHSYPGAYLSPGFHYPVYG-KMSGREEAEKVNTSPSINT
       90       100       110       120        130       140       

           690       700       710       720       730       740   
mKIAA0 KASSESKALDILQQHASHYKSKSPTISDKNSQERDRGGCGVVGGGGSCGSVAGAGGTDRS
       :..::.::::.::.::..:.::::..:                                 
mKIAA1 KTASEAKALDLLQHHANQYRSKSPAVSLLLLVVKRPCLVGEGRQETEQS           
       150       160       170       180       190                 




804 residues in 1 query   sequences
1768213 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:49 2006 done: Mon Mar 27 10:16:50 2006
 Scan time:  0.960 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]